SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52605

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene52605
AAATTGAGTACAAGCAGTTCAAATGGTTTCGGTTCTTTGTAAAGAAAGCTTCACAAGTTTTCTATTTGCATTTTGCTCTCAAGAAACGGGCAATTATTGAGGAGCTGCATGAGAAGCAGGAGCAGGTTAAAGAGTGGCTCCAGAGTATTGGTATTGGAGAGCACACAGCTGGAGTAGAGGAAGCGCACGATGAAGATGAACATGATGAAGAACTGGGTATCCTCATACCAAGAGGA

Ace file of the UniGene sp_v3.0_unigene52605

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to PLDP1 (PHOSPHOLIPASE D ZETA1); phospholipase D n=1 Tax=Vitis vinifera RepID=UPI0001983212	-	-	2.0e-17	80%
FL-Next	sp=Phospholipase D p1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase D.	EC:3.1.4.4	-	4.421e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycerophospholipid metabolism	00564	4.421e-09	%
Sma3	Ether lipid metabolism	00565	4.421e-09	%
Sma3	Metabolic pathways	01100	4.421e-09	%

Source	Gene names
Sma3	At3g05630; At3g16785; At3g16790; GSVIVT00033053001; K20I9_1; MGL6.26; MtrDRAFT_AC147963g27v2; OJ1045_C06.16; OJ1116_C07.11; OSJNBa0009L15.6; Os05g0358700; OsI_01583; OsI_19623; OsJ_01476; OsJ_18219; PHYPADRAFT_101239; PLDP1; PLDP2; POPTRDRAFT_1096093; POP

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	phospholipase D activity	GO:0004630	Molecular Function	-
Sma3	NAPE-specific phospholipase D activity	GO:0070290	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	lipid catabolic process	GO:0016042	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	Phospholipase D, eukaryota	IPR016555	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16785.1	PLDP1, PLDZ1, PLDZETA1, PLD ZETA 1 phospholipase D P1 chr3:5711329-5718696 FORWARD LENGTH=1096	2.0e-22	81%
RefSeq	Arabidopsis thaliana	NP_188302.2	phospholipase D P1 [Arabidopsis thaliana]	2.0e-22	81%
RefSeq	Populus trichocarpa	XP_002315486.1	predicted protein [Populus trichocarpa]	2.0e-20	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LRZ5

Fln msg: Distance to subject end: 945 aas, your sequence is shorter than subject: 78 - 1096

Fln protein: IEYKQFKWFRFFVKKASQVFYLHFALKKRAIIEELHEKQEQVKEWLQSIGIGEHTAGVEEAHDEDEHDEELGILIPRG

Protein Length: 79

Fln nts: AAATTGAGTACAAGCAGTTCAAATGGTTTCGGTTCTTTGTAAAGAAAGCTTCACAAGTTTTCTATTTGCATTTTGCTCTCAAGAAACGGGCAATTATTGAGGAGCTGCATGAGAAGCAGGAGCAGGTTAAAGAGTGGCTCCAGAGTATTGGTATTGGAGAGCACACAGCTGGAGTAGAGGAAGCGCACGATGAAGATGAACATGATGAAGAACTGGGTATCCTCATACCAAGAGGA

Fln Alignment:

F51TW9002FDOZL___EYKQFKWFRFFVKKASQVFYLHFALKKRAIIEELHEKQEQVKEWLQSIGIGEH
Q9LRZ5_______________QYKQFKWQ--LVKKASQVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain