SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52545

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene52545
TACAGCTTACCAAACTCCAGGATTATGATTCATCAACCTCTTGGCGGTGGTCAGGGTCAACAGACAGACCTTGAAATTCAGGCAAATGAAATATTGTATCATAAGGCTAATCTGAATGGTTATCTAGCATACCACACTGGGCAGTCCATACAGAAGATTGTTGAAGATACTGATCGGGACTTCTTTATGAGTGCAAAGGAGGACAAAAGACTGTGGTCTTATGATGGTGTCATTGCAAATCCTCTT

Ace file of the UniGene sp_v3.0_unigene52545

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=A9NZU9_PICSI	-	-	1.0e-34	89%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	ATP-dependent Clp protease proteolytic subunit	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Endopeptidase Clp.	EC:3.4.21.92	-	4.842e-07	-

Source	Gene names
Sma3	At1g02560; CHLREDRAFT_182996; CHLREDRAFT_55336; CLP1; CLPP1; CLPP4; CLPP5; ClpP1; ClpP4; ClpP5; GSVIVT00028120001; LOC_Os03g19510; MICPUCDRAFT_14114; MICPUCDRAFT_55668; MICPUN_107331; MICPUN_112702; NCLPP1; NCLPP5; OSTLU_15385; OSTLU_30030; Os03g0308100;

Source	GOs	Term	Type	Identity
Sma3	chloroplast thylakoid	GO:0009534	Cellular Component	-
Sma3	chloroplastic endopeptidase Clp complex	GO:0009840	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S14, ClpP	IPR001907	-	-
Sma3	Trigger factor, C-terminal, bacterial	IPR008880	-	-
Sma3	Acute myeloid leukemia 1 (AML 1)/Runt	IPR013524	-	-
Sma3	Peptidase S14, ClpP, active site	IPR018215	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G02560.1	CLPP5, NCLPP5, NCLPP1 nuclear encoded CLP protease 5 chr1:538000-539805 FORWARD LENGTH=298	3.0e-40	79%
RefSeq	Arabidopsis thaliana	NP_563657.1	ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana]	3.0e-40	79%
RefSeq	Populus trichocarpa	XP_002320293.1	predicted protein [Populus trichocarpa]	3.0e-40	76%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZU9

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 82 - 303

Fln protein: YSLPNSRIMIHQPLGGGQGQQTDLEIQANEILYHKANLNGYLAYHTGQSIQKIVEDTDRDFFMSAKEDKRLWSYDGVIANPL

Protein Length: 83

Fln nts: TACAGCTTACCAAACTCCAGGATTATGATTCATCAACCTCTTGGCGGTGGTCAGGGTCAACAGACAGACCTTGAAATTCAGGCAAATGAAATATTGTATCATAAGGCTAATCTGAATGGTTATCTAGCATACCACACTGGGCAGTCCATACAGAAGATTGTTGAAGATACTGATCGGGACTTCTTTATGAGTGCAAAGGAGGACAAAAGACTGTGGTCTTATGATGGTGTCATTGCAAATCCTCTT

Fln Alignment:

F51TW9002GBOYN___YSLPNSRIMIHQPLGGGQGQQTDLEIQANEILYHKANLNGYLAYHTGQSIQKIVEDTDRDFFMSAKEDKRLWSYDGVIANPL
A9NZU9_______________YSLPNSRIMIHQPLGGGQGQQSDLEIQANEILHHKANLNGYLAYHTGQSIEKIVEDTDRDFFMSAKEAKDYGLIDGVIANPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain