SustainPineDB

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Assembly info
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SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52497

Length: 235 nt

UniGene Fasta

>sp_v3.0_unigene52497
ATTACATTGGGTTTAGTGATGGAGTCTGCATCAGCCTCGTCCTCGGAAGATAGTGCAGGCAGTCACAAACGAGTGAGGTTCTTCGACGAGAAGATGAGGAATTTGTGCTGGCAGAAGGTAGATGTTGTGGCAGGTCGTCATCCAGAACGATGGAGGAAGGACGGTGCAGGCAACATTATCTGCAGAAGGTTTGGGAATTGTGAAGGCTGTCTCTGCTACGAGTATGACCACATTA

Ace file of the UniGene sp_v3.0_unigene52497

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HNH endonuclease domain-containing protein (Fragment) n=5 Tax=Pseudotsuga RepID=C6F7K9_PSEMZ	-	-	8.0e-27	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	At1g18680; At1g18680/F6A14_21; F6A14.21; GSVIVT00016286001; LOC_Os10g18890; OJ1325D05.10; OJA1325D05.4; Os10g0335200; OsI_33113; OsJ_31114; PHYPADRAFT_204249; POPTRDRAFT_422351; RCOM_1471010;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	HNH endonuclease	IPR002711	-	0.0	-
Sma3	HNH nuclease	IPR003615	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G18680.1	HNH endonuclease domain-containing protein chr1:6432133-6433434 REVERSE LENGTH=186	4.0e-28	71%
RefSeq	Arabidopsis thaliana	NP_173303.1	HNH endonuclease domain-containing protein [Arabidopsis thaliana]	5.0e-28	71%
RefSeq	Populus trichocarpa	XP_002317971.1	predicted protein, partial [Populus trichocarpa]	1.0e-27	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR05

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 72 - 168

Fln protein: MESASASSSEDSAGSHKRVRFFDEKMRNLCWQKVDVVAGRHPERWRKDGAGNIICRRFGNCEGCLCYEYDHI

Protein Length: 73

Fln nts: ATTACATTGGGTTTAGTG_-_ATGGAGTCTGCATCAGCCTCGTCCTCGGAAGATAGTGCAGGCAGTCACAAACGAGTGAGGTTCTTCGACGAGAAGATGAGGAATTTGTGCTGGCAGAAGGTAGATGTTGTGGCAGGTCGTCATCCAGAACGATGGAGGAAGGACGGTGCAGGCAACATTATCTGCAGAAGGTTTGGGAATTGTGAAGGCTGTCTCTGCTACGAGTATGACCACATTA

Fln Alignment:

F51TW9002IKTDA___HKRVRFFDEKMRNLCWQKVDVVAGRHPERWRKDGAGNIICRRFGNCEGCLCYEYDHI
A9NR05_______________HKRVRFFDEKMRNLCWQKADVVAGRHPERWRKDGAGNIICRRFGHCEGCLCYEYDHI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain