SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52475

Length: 187 nt

UniGene Fasta

>sp_v3.0_unigene52475
CCTCGTGAAAGATTGCGCAGTTCAGGTGTTGAAATAATTCAACATGGTGCATGCTTGGCACTGGGTTTGGCTACTTTGGGAACTGCCGATGAAGNGATTTATGAGCATGTTAAGAACGTTCTTTACTTAGCGCAGTTGTTGAAGAGGCTGCAGGCTTAAGTATGGGCTTGCTTATGGTTGGAACTAC

Ace file of the UniGene sp_v3.0_unigene52475

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome subunit RPN2a [Arabidopsis thaliana]	-	-	0.0001	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	Gene names
Sma3	At1g04810; At2g32730; B0402A04.3; F13M7.20; GSVIVT00009324001; GSVIVT00031868001; OSJNBa0060N03.12; Os08g0224700; OsI_17319; OsI_28284; OsJ_16095; OsJ_26464; P0494D11.3; PHYPADRAFT_166351; PHYPADRAFT_223480; POPTRDRAFT_577415; POPTRDRAFT_829819; RCOM_1019

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	IPR016642	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS7

Fln msg: Separated hits, possible frame ERROR between 126 and 129, Distance to subject end: 460 aas, your sequence is shorter than subject: 62 - 773

Fln protein: PRERLRSSGVEIIQHGACLALGLATLGTADEEIYEHVKNVLxxSAVVEEAAGLSMGLLMVGT

Protein Length: 63

Fln nts: CCTCGTGAAAGATTGCGCAGTTCAGGTGTTGAAATAATTCAACATGGTGCATGCTTGGCACTGGGTTTGGCTACTTTGGGAACTGCCGATGAAGaGATTTATGAGCATGTTAAGAACGTTCTTTAxxxTAGCGCAGTTGTTGAAGAGGCTGCAGGCTTAAGTATGGGCTTGCTTATGGTTGGAACTAC

Fln Alignment:

F51TW9002G7Y98___RERLRSSGVEIIQHXXXXXXXXXXXXXXDEEIYEHVKNVLYxSAVVEEAAGLSMGLLMVGT
B8LQS7_______________RESLRSTNVEIIQHGACLGLGLAALGTADEEIYEDVKNVLYxNAVAGEAAGISMGLLMVGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain