SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52438

Length: 163 nt

UniGene Fasta

>sp_v3.0_unigene52438
GTCAGCCATGCACGTTCTAGCATTGGAGGGGCTGATTGCAGTCATTCATAGCATGGCAGACAGAGTCAATGCTGCATCTTCACTTCCTGAACCAACACCAATAAGGGAGATTGAAGAGTATGAGCCTTTCNGGACAGTAACATGTGATAATTATGAAGATCCC

Ace file of the UniGene sp_v3.0_unigene52438

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pattern formation protein EMB30 [Arabidopsis thaliana]	-	-	2.0e-07	51%
FL-Next	sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%

Source	Gene names
Sma3	PHYPADRAFT_175438;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	ARF guanyl-nucleotide exchange factor activity	GO:0005086	Molecular Function	-
Sma3	regulation of ARF protein signal transduction	GO:0032012	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SEC7-like	IPR000904	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G13980.1	GN, VAN7, EMB30 sec7 domain-containing protein chr1:4789587-4794397 FORWARD LENGTH=1451	3.0e-11	51%
RefSeq	Arabidopsis thaliana	NP_001184991.1	Pattern formation protein EMB30 [Arabidopsis thaliana]	4.0e-11	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42510

Fln msg: Distance to subject end: 903 aas, your sequence is shorter than subject: 54 - 1451

Fln protein: SAMHVLALEGLIAVIHSMADRVNAASSLPEPTPIREIEEYEPFRTVTCDNYEDP

Protein Length: 55

Fln nts: GTCAGCCATGCACGTTCTAGCATTGGAGGGGCTGATTGCAGTCATTCATAGCATGGCAGACAGAGTCAATGCTGCATCTTCACTTCCTGAACCAACACCAATAAGGGAGATTGAAGAGTATGAGCCTTTCaGGACAGTAACATGTGATAATTATGAAGATCCC

Fln Alignment:

F51TW9002HAF3T___SAMHVLALEGLIAVIHSMADRVNAASSLPEPTPIREIEEYEPFRTVTCDNYEDP
Q42510_______________SAMHILALDGLIAVIQGMAERISNGLTGLDLGPV-HLDEYTPFWMVKCDNYSDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain