SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52419

Length: 399 nt

UniGene Fasta

>sp_v3.0_unigene52419
ATGGGGGGGCGGATTGCCGTTGAACATTTAAAGACTCGAACTCGTGCCTCTTCCGTGAAAGTGGAATGTGCGCCGCGACTTTCCCATTGTCGTGCTCTCAAAGCCTAAACCAGTTAAAGAGGTGCAGAGTGCACGCTTGAATCTCCGGAGGAGAGGGTTCTTTACTGTTTGATCCATGGCATTACGGTTTGAGGTGCTGGGAACATTTAACCGAGCTCGTGCAGCCAGCCTCACGCTTCCACATTTTCGATGTCAAACTCCTCTATTTATGCCGGTTGGAACAAAAGGTGCAATAAAGGGACTTGCAAATGATCAATTGGAGGAGATTGGCTGCCAAATTATTCTTGGAAACNCATACCATTTAGAACTTTGTCCTGGTGCTGATTTAATTGATGAACT

Ace file of the UniGene sp_v3.0_unigene52419

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Queuine tRNA-ribosyltransferase n=4 Tax=Poaceae RepID=Q6K4A3_ORYSJ	-	-	9.0e-29	83%
FL-Next	sp=Queuine tRNA-ribosyltransferase; Zea mays (Maize).	-	-	0.0	83%
Sma3	Queuine tRNA-ribosyltransferase	-	-	1.787e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	tRNA-guanine transglycosylase.	EC:2.4.2.29	-	2.073e-30	-

Source	Gene names
Sma3	GSVIVT00015180001; OJ1595_D08.14-1; OSTLU_12116; Os09g0469900; OsI_31716; OsJ_29703; Ot01g03000; P0676H02.32-1; PHYPADRAFT_195351; POPTRDRAFT_411694; RCOM_1037440; VITISV_006782;

Source	GOs	Term	Type	Identity
Sma3	transcription factor TFIID complex	GO:0005669	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	queuine tRNA-ribosyltransferase activity	GO:0008479	Molecular Function	-
Sma3	transcription initiation factor activity	GO:0016986	Molecular Function	-
Sma3	transcription initiation, DNA-dependent	GO:0006352	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	queuosine biosynthetic process	GO:0008616	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Crotonase, core	IPR001753	-	-
Sma3	Queuine/other tRNA-ribosyltransferase	IPR002616	-	-
Sma3	Transcription initiation factor TFIID	IPR003228	-	-
Sma3	Queuine tRNA-ribosyltransferase	IPR004803	-	-
Sma3	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	IPR006615	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3		IPR010460	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002302315.1	predicted protein, partial [Populus trichocarpa]	9.0e-34	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B4FSA6

Fln msg: Distance to subject end: 258 aas, your sequence is shorter than subject: 74 - 333

Fln protein: MALRFEVLGTFNRARAASLTLPHFRCQTPLFMPVGTKGAIKGLANDQLEEIGCQIILGNTYHLELCPGADLIDE

Protein Length: 75

Fln nts: ATGGGGGGGCGGATTGCCGTTGAACATTTAAAGACTCGAACTCGTGCCTCTTCCGTGAAAGTGGAATGTGCGCCGCGACTTTCCCATTGTCGTGCTCTCAAAGCCTAAACCAGTTAAAGAGGTGCAGAGTGCACGCTTGAATCTCCGGAGGAGAGGGTTCTTTACTGTTTGATCC_-_ATGGCATTACGGTTTGAGGTGCTGGGAACATTTAACCGAGCTCGTGCAGCCAGCCTCACGCTTCCACATTTTCGATGTCAAACTCCTCTATTTATGCCGGTTGGAACAAAAGGTGCAATAAAGGGACTTGCAAATGATCAATTGGAGGAGATTGGCTGCCAAATTATTCTTGGAAACaCATACCATTTAGAACTTTGTCCTGGTGCTGATTTAATTGATGAACT

Fln Alignment:

F51TW9002JHKKF___MALRFEVLGTFNRARAASLTLPHFRCQTPLFMPVGTKGAIKGLANDQLEEIGCQIILGNTYHLELCPGADLIDE
B4FSA6_______________MALRFEILGRFNRARAARLTLPHFTCQTPLFMPVGTQGTIKGLTTDQLEEIGCQIILGNTYHLELRPGSQLIDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain