SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52404

Length: 352 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene52404
GGTTGCTGCAGCTTGAGGGGAATACAATGGCGGATTAAGCTTGGCGTTTGCGGTCTAACAAATCGTCTATTGACGAACTCCGTCGAGCTGCCGCAGATGGGCGGCGAAAGTATGCAGACTTGAGAAGGCGGTTTCTTGCTGACCCGCACATAATGGAGGACGGGCAGAAGACAGCTCATTTGAACATGGACAATCCATTGTCTCAAAAGCATATGGGGACGTTTCTTCAGAAATGCTGAATTGGAAAGAAATATAGACAAAGATCTGACACGATTATATCCAGAGCATGGGAGTTATTTTCAAACACCTTCATGTCAGGCTTATGTTGAGGCGTATCTTGCTTGTATGGTCT

Ace file of the UniGene sp_v3.0_unigene52404 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RabGAP/TBC domain-containing protein [Arabidopsis thaliana] emb\|CAB43670.1\| putative protein [Arabidopsis thaliana] emb\|CAB79753.1\| putative protein [Arabidopsis thaliana] gb\|AAL66975.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20178.1\| unknown protei	-	-	4.0e-11	65%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	73%

Source	Gene names
Sma3	AT4G29950; AT4g29950; At4g29950; At5g57210; F27B13.190; GSVIVT00009262001;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	Rab GTPase activator activity	GO:0005097	Molecular Function	-
Sma3	regulation of Rab GTPase activity	GO:0032313	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G57210.1	Ypt/Rab-GAP domain of gyp1p superfamily protein chr5:23181088-23183705 REVERSE LENGTH=737	3.0e-14	65%
RefSeq	Arabidopsis thaliana	NP_200531.1	microtubule-associated protein-related protein [Arabidopsis thaliana]	3.0e-14	65%
RefSeq	Populus trichocarpa	XP_002325266.1	predicted protein, partial [Populus trichocarpa]	1.0e-26	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RIR9

Fln msg: Separated hits, possible frame ERROR between 203 and 208, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 618 aas, your sequence is shorter than subject: 117 - 769

Fln protein: LLQLEGNTMAD*AWRLRSNKSSIDELRRAAADGRRKYADLRRRFLADPHIMEDGQKTAHLNMDNPLxxxSIWGRFFRNAELERNIDKDLTRLYPEHGSYFQTPSCQAYVEAYLACMV

Protein Length: 118

Fln nts: GGTTGCTGCAGCTTGAGGGGAATACAATGGCGGATTAAGCTTGGCGTTTGCGGTCTAACAAATCGTCTATTGACGAACTCCGTCGAGCTGCCGCAGATGGGCGGCGAAAGTATGCAGACTTGAGAAGGCGGTTTCTTGCTGACCCGCACATAATGGAGGACGGGCAGAAGACAGCTCATTTGAACATGGACAATCCATTGTCxxxxxxAAGCATATGGGGACGTTTCTTCAGAAATGCTGAATTGGAAAGAAATATAGACAAAGATCTGACACGATTATATCCAGAGCATGGGAGTTATTTTCAAACACCTTCATGTCAGGCTTATGTTGAGGCGTATCTTGCTTGTATGGTCT

Fln Alignment:

F51TW9002HJRJA___SIDELRRAAADGRRKYADLRRRFLADPHIMEDGQKTAHLNMDNPLSxxSIWGRFFRNAELERNIDKDLTRLYPEHGSYFQTPSCQA
D8RIR9_______________SVDSLRRAAADGRRRYADLRRRLLVDPHLMEEGQKPPDVSMDNPLSxxSVWGKYFRNAEIERVIDKDLSRLYPEHGSFFQGSGCQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain