SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52381

Length: 420 nt

UniGene Fasta

>sp_v3.0_unigene52381
ATGGGGGAGGCAGGGGGCAGATGGCAGGGCAGCTAGGCAGCCTGCGACTTAGGCATTCACGGGCTAAGAAACCGTAACGTCACCAGACTTTTCCTGTTTTGAATCTCAGAATAGTTGCGAAAGGAGGCGATGACGAAGTACGTGGCTGTTAGCTCCATTGTGTGTTTCTTTCTATTTGTTTCTGCGTGCATAATTTCTGCCAATGGATTAGTTGTCCATGAACACGATCTGTCAAAGCCTGTGCATGGGCTTTCGTGGTCATTTTACAAGGATAGTTGCCCCGACTTGGAGGGCATAGTGAAATCGGTACTTGAGCCGGCGTTGGACGAAGATATCACTCAGGCCGCAGGCTTGCTGAGACTTCATTTCCATGACTGTTTTGTGCAGGGTTGCGATGGGTCTGTGTTGCTGACAGGAACT

Ace file of the UniGene sp_v3.0_unigene52381

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase 4 n=1 Tax=Litchi chinensis RepID=B7UCP4_LITCN	-	-	3.0e-20	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Peroxidase	-	-	1.138e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	1.25795e-41	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylalanine metabolism	00360	1.25795e-41	%
Sma3	Methane metabolism	00680	1.25795e-41	%
Sma3	Phenylpropanoid biosynthesis	00940	1.25795e-41	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.25795e-41	%
Sma3	Metabolic pathways	01100	1.25795e-41	%
Sma3	Biosynthesis of secondary metabolites	01110	1.25795e-41	%

Source	Gene names
Sma3	AoPOX1; At2g18140; At2g18150; At2g41480; At3g01190; F8D23.7; F8D23.8; FBP4; GSVIVT00003644001; GSVIVT00014550001; GSVIVT00016899001; GSVIVT00031723001; H0701F11.11; H0814G11.4; LOC_Os03g36560; OSJNBa0039K24.4; OSJNBa0039K24.5; Os01g0963200; Os03g0563600;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G71695.1	Peroxidase superfamily protein chr1:26964359-26966557 FORWARD LENGTH=358	6.0e-18	55%
RefSeq	Arabidopsis thaliana	NP_177313.1	peroxidase 12 [Arabidopsis thaliana]	7.0e-18	55%
RefSeq	Populus trichocarpa	XP_002306716.1	predicted protein [Populus trichocarpa]	5.0e-23	49%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU81

Fln msg: Distance to subject end: 276 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 102 - 389

Fln protein: LRKEAMTKYVAVSSIVCFFLFVSACIISANGLVVHEHDLSKPVHGLSWSFYKDSCPDLEGIVKSVLEPALDEDITQAAGLLRLHFHDCFVQGCDGSVLLTGT

Protein Length: 103

Fln nts: ATGGGGGAGGCAGGGGGCAGATGGCAGGGCAGCTAGGCAGCCTGCGACTTAGGCATTCACGGGCTAAGAAACCGTAACGTCACCAGACTTTTCCTGTTTTGAATCTCAGAATAGTTGCGAAAGGAGGCGATGACGAAGTACGTGGCTGTTAGCTCCATTGTGTGTTTCTTTCTATTTGTTTCTGCGTGCATAATTTCTGCCAATGGATTAGTTGTCCATGAACACGATCTGTCAAAGCCTGTGCATGGGCTTTCGTGGTCATTTTACAAGGATAGTTGCCCCGACTTGGAGGGCATAGTGAAATCGGTACTTGAGCCGGCGTTGGACGAAGATATCACTCAGGCCGCAGGCTTGCTGAGACTTCATTTCCATGACTGTTTTGTGCAGGGTTGCGATGGGTCTGTGTTGCTGACAGGAACT

Fln Alignment:

F51TW9002GDKXT___FLF*ISE*LRKEAMTKYVAVSSIVCFFLFVSACIISANGLVVHEHDLSKPVHGLSWSFYKDSCPDLEGIVKSVLEPALDEDITQAAGLLRLHFHDCFVQGCDGSVLLTGT
A9NU81_______________YRFLISE-LQKDAMKKYRVFSSIACVFVFVSAFIISTSGLHVHVDDLPTPVDGLSWTFYKETCPDLEDIVKSTLEQALDQDITQAAGLLRLHFHDCFVQGCDGSLLLTGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain