SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52341

Length: 122 nt

UniGene Fasta

>sp_v3.0_unigene52341
ATGGGATCAACGCAGAGTACATGGGCATCTTCCAGAAAAGAGACTCCTGAACAGATTCTTGATGCTAAGTTGAGCACAGTGTCCTTTGCTTGGAGACAGCAAATGCTTGCAGCACTCAAAGT

Ace file of the UniGene sp_v3.0_unigene52341

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor-like protein kinase [Arabidopsis thaliana]	-	-	2.0e-07	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%

Source	Gene names
Sma3	AT2G41820; At2g41820; GSVIVT00025585001; LRR-RLK; OJ1119_B04.25; Os07g0207100; OsI_25328; POPTRDRAFT_560512; POPTRDRAFT_808447; RCOM_0750120; VITISV_009158;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G41820.1	Leucine-rich repeat protein kinase family protein chr2:17447170-17449914 FORWARD LENGTH=890	2.0e-11	87%
RefSeq	Arabidopsis thaliana	NP_181713.1	Leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	3.0e-11	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRM4

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 40 - 907

Fln protein: MGSTQSTWASSRKETPEQILDAKLSTVSFAWRQQMLAALK

Protein Length: 41

Fln nts: ATGGGATCAACGCAGAGTACATGGGCATCTTCCAGAAAAGAGACTCCTGAACAGATTCTTGATGCTAAGTTGAGCACAGTGTCCTTTGCTTGGAGACAGCAAATGCTTGCAGCACTCAAAGT

Fln Alignment:

F51TW9002J1HPY___ASSRKETPEQILDAKLSTVSFAWRQQMLAALK
B8LRM4_______________ASSRKETPEQILDAKLSTVSFAWRQQMLAALK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain