SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52307

Length: 393 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene52307
CCATTTATTCATGAGATGCTAGACGAACTCCATGGCGCAGAATATTTCTCAAATAGATTTGGGATTAGGCTACTATAAAATTCGAGTAAGATTAGAAGACGTCAAGAAGACTGCCTTCAGAACTCATGAAGGGCAGTGTGAATTTAAGGAAATGCCATTTGGTTTAATAAATGCATCAACCACATTCCAAGTAACCATGAATGAACTCTTCCACCCATACCTGTGAAAATTTGTATTAGTCTTCTTCGACGATATCCTTGTCTACATCAAAACGTGGAAGGAGCACCTCAAGCATCTAGAGGAAGTACTTTTCGTATTGGAGAAGAATCAATTTTATGCAAAGTTATCAAAATGTACCTTTGGGCAAAAGGAAGTTGAATACCTAGAACACAT

Ace file of the UniGene sp_v3.0_unigene52307 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN	-	-	5.0e-36	58%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	42%
Sma3	Reverse transcriptase	-	-	1.317e-17	-

Source	Gene names
Sma3	At2g05610; At2g07660; At2g10780; F23H6.1; H0124B04.16; H0502G05.6; LOC_Os03g05340; LOC_Os03g05350; LOC_Os03g06110; LOC_Os03g10000; LOC_Os03g13350; LOC_Os03g15160; LOC_Os03g26020; LOC_Os03g26750; LOC_Os03g29790; LOC_Os03g30350; LOC_Os03g41770; LOC_Os03g478

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	carbon utilization	GO:0015976	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 19 aas,

Fln protein: HLFMRC*TNSMAQNISQIDLGLGYYKIRVRLEDVKKTAFRTHEGQCEFKEMPFGLINASTTFQVTMNELFHPYL*KFVLVFFDDILVYIKTWKEHLKHLEEVLFVLEKNQFYAKLSKCTFGQKEVEYLEH

Protein Length: 131

Fln nts: CCATTTATTCATGAGATGCTAGACGAACTCCATGGCGCAGAATATTTCTCAAATAGATTTGGGATTAGGCTACTATAAAATTCGAGTAAGATTAGAAGACGTCAAGAAGACTGCCTTCAGAACTCATGAAGGGCAGTGTGAATTTAAGGAAATGCCATTTGGTTTAATAAATGCATCAACCACATTCCAAGTAACCATGAATGAACTCTTCCACCCATACCTGTGAAAATTTGTATTAGTCTTCTTCGACGATATCCTTGTCTACATCAAAACGTGGAAGGAGCACCTCAAGCATCTAGAGGAAGTACTTTTCGTATTGGAGAAGAATCAATTTTATGCAAAGTTATCAAAATGTACCTTTGGGCAAAAGGAAGTTGAATACCTAGAACACAT

Fln Alignment:

F51TW9002FLG1J___SQIDLGLGYYKIRVRLEDVKKTAFRTHEGQCEFKEMPFGLINASTTFQVTMNELFHPYL*KFVLVFFDDILVYI---KTWKEHLKHLEEV
P31843_______________TKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIKHLRVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain