SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52188

Length: 169 nt

UniGene Fasta

>sp_v3.0_unigene52188
GAATCATTTCTCTTTTAGATGAAGCCTGCATGTTTCCTAGATCAACACATGAAACGTTTGCTACCAAGCTGTTTCAAAGCTTCAAAAATACATAGTCGATTCAAGAAGCCGAAGCTCTCACTTACGGACTTCACAATTTCTCATTATGCGGGTGAGGTAACCTACCAAG

Ace file of the UniGene sp_v3.0_unigene52188

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin class 11-1 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX1_ADICA	-	-	2.0e-16	86%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	82%
Sma3	Myosin XI, putative	-	-	2.271e-13	-

Source	Gene names
Sma3	At1g17580; At5g20490; At5g43900; F20D22.7; GSVIVT00016505001; GSVIVT00020400001; GSVIVT00028463001; GSVIVT00034148001; LOC_Os03g48140; M2; MYO1; MyoXIB; Ntmy170; Ntmy175; OJ1136_C12.6; OSJNBb0024N19.13; Os02g0816900; Os03g0686300; OsI_09444; OsI_13067; Os

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	myosin complex	GO:0016459	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	actin filament-based movement	GO:0030048	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	HAMP linker domain	IPR003660	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G17580.1	MYA1, ATMYA1, XI-1 myosin 1 chr1:6039453-6049309 FORWARD LENGTH=1520	9.0e-19	85%
RefSeq	Arabidopsis thaliana	NP_173201.2	myosin 1 [Arabidopsis thaliana]	1.0e-18	85%
RefSeq	Populus trichocarpa	XP_002329057.1	predicted protein [Populus trichocarpa]	7.0e-18	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7KFH0

Fln msg: Overlapping hits, possible frame ERROR between 89 and 73, Distance to subject end: 966 aas, your sequence is shorter than subject: 56 - 1520

Fln protein: IISLLDEACMFPRSTHETFATKLxxxxxxxHSRFKKPKLSLTDFTISHYAGEVTYQ

Protein Length: 57

Fln nts: GAATCATTTCTCTTTTAGATGAAGCCTGCATGTTTCCTAGATCAACACATGAAACGTTTGCTACCAAGCTGxxxxxxxxxxxxxxxxxxxxxCATAGTCGATTCAAGAAGCCGAAGCTCTCACTTACGGACTTCACAATTTCTCATTATGCGGGTGAGGTAACCTACCAAG

Fln Alignment:

F51TW9002FQ70L___IISLLDEACMFPRSTHETFATKLxxxxxxHSRFKKPKLSLTDFTISHYAGEVTYQ
D7KFH0_______________VISLLDEACMFPKSTHETFSQKLxxxxxxHKRFAKPKLSRTDFTISHYAGEVTYQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain