SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52179

Length: 390 nt

UniGene Fasta

>sp_v3.0_unigene52179
ATTATTGGGTCTTGTTCCTCTAACAAAGGGACGAAAACTCGTTAGATGCAAATGGGTTTACAGAACCAAGTGTGGACCAGATGGAAAAGTTGATAAACATAAAGCTCGTCTTGTTGCTAATGGTTTTTCACAAGCTGAAAGCATTGACTATACTGAAACCTTCTTCCCTATTTGCCAAAATGAACTCTATCCACCTTGTTCTTTCCCTTGCTGCCTCTTTCAAATGGGAAGTCCATCAGATGGATGTTAAATCTGCCTTTTTGCATGGGGACTTGCATGAATAAATCTATATGGAACAACCTACTAGCTTTATACAAACAAACTCCAACCTTGTATGTCGTCTTAAGAAATCCCTTTATGGTATCAAGCAAGCTCCTCGAGCTTGGCATG

Ace file of the UniGene sp_v3.0_unigene52179

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZU8_ORYSJ	-	-	1.0e-32	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Retrotransposon protein, putative, unclassified	-	-	1.033e-07	-

Source	Gene names
Sma3	At2g07010; At2g16670; At2g24660; F11I4_21; LOC_Os03g59190; LOC_Os03g61660; LOC_Os10g01750; LOC_Os10g04074; LOC_Os10g18860; LOC_Os11g29950; LOC_Os11g35630; LOC_Os11g36110; LOC_Os11g44780; LOC_Os12g05290; LOC_Os12g18600; LOC_Os12g44200; OJ1325D05.14; OJA132

Source	GOs	Term	Type	Identity
Sma3	oxygen evolving complex	GO:0009654	Cellular Component	-
Sma3	extrinsic to membrane	GO:0019898	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	alpha-mannosidase activity	GO:0004559	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	mannose metabolic process	GO:0006013	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Photosystem II PsbQ, oxygen evolving complex	IPR008797	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Overlapping hits, possible frame ERROR between 178 and 174, Distance to subject end: 221 aas, atg_distance in limit (1-15): atg_distance = 13, W2: There is no M at the beginning, your sequence is shorter than subject: 130 - 363

Fln protein: LLGLVPLTKGRKLVRCKWVYRTKCGPDGKVDKHKARLVANGFSQAESIDYTETFFPIxxxMNSIHLVLSLAASFKWEVHQMDVKSAFLHGDLHE*IYMEQPTSFIQTNSNLVCRLKKSLYGIKQAPRAWH

Protein Length: 131

Fln nts: ATTATTGGGTCTTGTTCCTCTAACAAAGGGACGAAAACTCGTTAGATGCAAATGGGTTTACAGAACCAAGTGTGGACCAGATGGAAAAGTTGATAAACATAAAGCTCGTCTTGTTGCTAATGGTTTTTCACAAGCTGAAAGCATTGACTATACTGAAACCTTCTTCCCTATTxxxxxxxxxATGAACTCTATCCACCTTGTTCTTTCCCTTGCTGCCTCTTTCAAATGGGAAGTCCATCAGATGGATGTTAAATCTGCCTTTTTGCATGGGGACTTGCATGAATAAATCTATATGGAACAACCTACTAGCTTTATACAAACAAACTCCAACCTTGTATGTCGTCTTAAGAAATCCCTTTATGGTATCAAGCAAGCTCCTCGAGCTTGGCATG

Fln Alignment:

F51TW9001EI9VM___LVPLTKGRKLVRCKWVYRTKCGPDGKVDKHKARLVANGFSQAESIDYTETFFPIxxMNSIHLVLSLAASFKWEVHQMDVKSAFLHGDLHE*IYMEQPTSF-IQTNSNLVCRLKKSLYGIKQAPRAWH
B8LKV8_______________LVDLPKEKECISVKWVYKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVxxLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain