SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52177

Length: 185 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene52177
TATGTTATTCTATTTTTCTATCCTTTGGACTTCACTTTTGTCTGCCCCACAGGTGAAATCACTGCTTTCAGTGACAGATATTCTGAGTTTGAGAAGTTGAACACTGAAATTCTTGGTGTTTCTATTGATAGTGTGTTTTCTCACCTTGCTTGGGTTCAAACTGAAAGGAAAGCTGGCGGTCTTGG

Ace file of the UniGene sp_v3.0_unigene52177 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative 2-cys peroxiredoxin (Fragment) n=1 Tax=Lemna minor RepID=C7DRS6_LEMMI	-	-	2.0e-25	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Thioredoxin peroxidase	-	-	7.442e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on a peroxide as acceptor, Peroxidases.	EC:1.11.1.-	-	7.301e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		7.301e-06	%
Sma3	Peroxiredoxin.	EC:1.11.1.15	-	7.013e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		7.013e-19	%
Sma3	Metabolic pathways	01100		7.013e-19	%

Source	Gene names
Sma3	2-Cys PRx; At3g11630; At5g06290; BAS1; C2C-Prx; CHLREDRAFT_108953; CHLREDRAFT_142363; CHLREDRAFT_155464; F24K9.28; GSVIVT00021525001; Grc000117; Heak293_Cp051; LOC_Os02g33450; MHF15.19; MICPUCDRAFT_49495; MICPUN_109516; OJ991214_12.15; OSIGBa0092M08.6; OS

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	antioxidant activity	GO:0016209	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	peroxiredoxin activity	GO:0051920	Molecular Function	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3		IPR012335	-	-
Sma3		IPR017936	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G06290.1	2-Cys Prx B, 2CPB 2-cysteine peroxiredoxin B chr5:1919380-1921211 FORWARD LENGTH=273	4.0e-33	90%
RefSeq	Arabidopsis thaliana	NP_568166.1	2-Cys peroxiredoxin BAS1-like protein [Arabidopsis thaliana]	5.0e-33	90%
RefSeq	Populus trichocarpa	XP_002323394.1	2-cys peroxiredoxin [Populus trichocarpa]	1.0e-31	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRA2

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 61 - 282

Fln protein: YVILFFYPLDFTFVCPTGEITAFSDRYSEFEKLNTEILGVSIDSVFSHLAWVQTERKAGGL

Protein Length: 62

Fln nts: TATGTTATTCTATTTTTCTATCCTTTGGACTTCACTTTTGTCTGCCCCACAGGTGAAATCACTGCTTTCAGTGACAGATATTCTGAGTTTGAGAAGTTGAACACTGAAATTCTTGGTGTTTCTATTGATAGTGTGTTTTCTCACCTTGCTTGGGTTCAAACTGAAAGGAAAGCTGGCGGTCTTGG

Fln Alignment:

F51TW9001AKYDL___YVILFFYPLDFTFVCPTGEITAFSDRYSEFEKLNTEILGVSIDSVFSHLAWVQTERKAGGL
A9NRA2_______________YVILFFYPLDFTFVCPT-EITAFSDRHSEFEKLNTEILGVSIDSVFSHLAWVQTDRKAGGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain