SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52151

Length: 406 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene52151
ATTCTAGATGACACGGTTTTCCTTGAATAACAGTAATCAAGTTAATCTGTATTTGCAAAACAGTACCTGCATTTGTGGATAAGATAGCAGCCAGTGATGGCTATCTCCACTAATATCCCACTGCTATTATAACAACTAAGTTATGATAGATTTCCCCTAAAATATATACGGTACCTACCATGATAGACTCCGGAATGGAATGGAAGGGAGAAAATTGAAATACCTGCAACCACGGCATTCGTAACTGTGGAGGGAAGTGGTGCAGACAACACTATAATACAATTGGGGTTAGTTATACCGCTGATACTAAAGGACCAAGAGGCCTTCCCATTGGCACTAAATTCTCTGCAACTTTTGCAGTTGATTCTACCAATAACTTCATTGCCAAAAACATCACCTTCAAGAA

Ace file of the UniGene sp_v3.0_unigene52151 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectinesterase n=1 Tax=Populus trichocarpa RepID=B9N5H3_POPTR	-	-	3.0e-09	66%
FL-Next	sp=Probable pectinesterase 53; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002330522.1	predicted protein [Populus trichocarpa]	2.0e-11	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8VYZ3

Fln msg: Separated hits, possible frame ERROR between 288 and 297, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 195 aas, your sequence is shorter than subject: 135 - 383

Fln protein: ILDDTVFLE*Q*SS*SVFAKQYLHLWIR*QPVMAISTNIPLLL*QLSYDRFPLKYIRYLP**TPEWNGREKIEIPATTAFVTVEGSGADNTIIQLxxxxTADTKGPRGLPIGTKFSATFAVDSTNNFIAKNITFK

Protein Length: 136

Fln nts: ATTCTAGATGACACGGTTTTCCTTGAATAACAGTAATCAAGTTAATCTGTATTTGCAAAACAGTACCTGCATTTGTGGATAAGATAGCAGCCAGTGATGGCTATCTCCACTAATATCCCACTGCTATTATAACAACTAAGTTATGATAGATTTCCCCTAAAATATATACGGTACCTACCATGATAGACTCCGGAATGGAATGGAAGGGAGAAAATTGAAATACCTGCAACCACGGCATTCGTAACTGTGGAGGGAAGTGGTGCAGACAACACTATAATACAATTGGGxxxxxxxxxTACCGCTGATACTAAAGGACCAAGAGGCCTTCCCATTGGCACTAAATTCTCTGCAACTTTTGCAGTTGATTCTACCAATAACTTCATTGCCAAAAACATCACCTTCAAGAA

Fln Alignment:

F51TW9001D5V3S___REKIEIPATTAFVTVEGSGADNTIIQLGxxxTADTKGPRGLPIGTKFSATFAVDSTNNFIAKNITFK
Q8VYZ3_______________KEKVSIPPLKAFITIEGEGAEKTTVEWGxxxTAQTPDSKGNPMGTYNSASFAVNSP-FFVAKNITFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain