SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52126

Length: 351 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene52126
ACCTCGGTAGCCAGTTATACATCTATTAGGACTGTGATATCTCTTGTAGCCTAGATGGGATGGGAGATCCATCAAATGGATGTCAAGACGACATTTCTGAATGGGGTAATAGAAAAAGAGGTATATGTTGAACAACCAGAAGGCTTTGTAACTCATGAGAAGAAGTCTCATGGATGTAGACTGAAGAAAGCTTTGTATGGGCTGAAGCAGGCATCGAGAGCGTGGTATGGTCGAATAGATGGCTACTTGTAGAAGATGGGGTTTGTCAAGAGTGACGCGGATCCGAATCTCTACTATCTGGTTGTAGAGAACGAGCCACTTATCTTAGTATTATATATGGATGATCTCTTC

Ace file of the UniGene sp_v3.0_unigene52126 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=4 Tax=Ginkgo biloba RepID=Q06290_GINBI	-	-	2.0e-30	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Reverse transcriptase	-	-	1.788e-21	-

Source	Gene names
Sma3	At2g15650; B1110B01.4; F11I4_21; Fourf gag/pol; H0306F03.15; H0413E07.4; LOC_Os03g02500; LOC_Os03g21050; LOC_Os03g26290; LOC_Os03g61660; LOC_Os10g01750; LOC_Os10g04074; LOC_Os10g21080; LOC_Os10g21730; LOC_Os11g05840; LOC_Os11g08450; LOC_Os11g17200; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3		IPR010256	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 117 - 363

Fln protein: TSVASYTSIRTVISLVA*MGWEIHQMDVKTTFLNGVIEKEVYVEQPEGFVTHEKKSHGCRLKKALYGLKQASRAWYGRIDGYL*KMGFVKSDADPNLYYLVVENEPLILVLYMDDLF

Protein Length: 118

Fln nts: ACCTCGGTAGCCAGTTATACATCTATTAGGACTGTGATATCTCTTGTAGCCTAGATGGGATGGGAGATCCATCAAATGGATGTCAAGACGACATTTCTGAATGGGGTAATAGAAAAAGAGGTATATGTTGAACAACCAGAAGGCTTTGTAACTCATGAGAAGAAGTCTCATGGATGTAGACTGAAGAAAGCTTTGTATGGGCTGAAGCAGGCATCGAGAGCGTGGTATGGTCGAATAGATGGCTACTTGTAGAAGATGGGGTTTGTCAAGAGTGACGCGGATCCGAATCTCTACTATCTGGTTGTAGAGAACGAGCCACTTATCTTAGTATTATATATGGATGATCTCTTC

Fln Alignment:

F51TW9001CJ0EK___VASYTSIRTVISLVA*MGWEIHQMDVKTTFLNGVIEKEVYVEQPEGFVTHEKKSHGCRLKKALYGLKQASRAWYGRIDGYL*KMGFVKSDADPNLYYLVVE-NEPLILVLYMDDL
B8LKV8_______________VARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKVNEQGQILIVCLYVDDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain