SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51960

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene51960
GTTACATTGTTCAAAGTGGGTTTGATTTGGATGTATTTGTAGGGACTGGTCTCATAGACATGTATGCCAAGTGTGGTCGCATAGAAATTGCCCATCACGTGTTTGACAAAATGTCTAAAAAAAGATGTAGTCTCATGGAATGCAATGATTGCAGGGTATGGAATGCATGGGCATGGGAAAGATGCAGTTGCATGTTTTCTTCAGATGCGACGGACAGCTA

Ace file of the UniGene sp_v3.0_unigene51960

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SN39.1\|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18750, chloroplastic; Flags: Precursor emb\|CAB37460.1\| putative protein [Arabidopsis thaliana] emb\|CAB	-	-	8.0e-13	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18750.1	DOT4 Pentatricopeptide repeat (PPR) superfamily protein chr4:10304850-10307465 FORWARD LENGTH=871	5.0e-15	70%
RefSeq	Arabidopsis thaliana	NP_193610.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-15	70%
RefSeq	Populus trichocarpa	XP_002307076.1	predicted protein [Populus trichocarpa]	2.0e-14	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 276 aas, your sequence is shorter than subject: 73 - 795

Fln protein: YIVQSGFDLDVFVGTGLIDMYAKCGRIEIAHHVFDKMSxxxxxxxxxxxxxxxxxxGHGKDAVACFLQMRRTA

Protein Length: 74

Fln nts: GTTACATTGTTCAAAGTGGGTTTGATTTGGATGTATTTGTAGGGACTGGTCTCATAGACATGTATGCCAAGTGTGGTCGCATAGAAATTGCCCATCACGTGTTTGACAAAATGTCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGGCATGGGAAAGATGCAGTTGCATGTTTTCTTCAGATGCGACGGACAGCTA

Fln Alignment:

F51TW9001EO8NJ___YIVQSGFDLDVFVGTGLIDMYAKCGRIEIAHHVFDKMSxxDVVSWNAMIAGYGMHGHGKDAVACFLQMRRT
B8LQA8_______________YTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPxxDVVSWTTMILAYGIHGHGEDALALFSKMQET

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain