SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51930

Length: 351 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene51930
CAAACAACTACCCAAGGCAGGCATACAGGCAGACAGTTTCACATATCCTCTGGTACTCAAGGCTTGCGCTGGGCTCGGTTCGGCAGCTCTGCAAGAGGGAAAAGAGATTCATGATGATATAATCAGAAGAGGGTTTGAGTCGGATGTCTTTGTGGCCAATTCCCTCTTAGCTATGCATGCAAAATGTGGAAGTATAGAGCTTGCACAACAAGTGTTTGACAGAATGCCACAGAGAGATGTTGTTTCATGGAATTCCATGATCGTAGGGTATGGACAGAGTGGACATGTTAATGAGGCCTTGAGAGTTTTTGGTCAAATGAGACTCGAAAATGTAATCCCCAACGCTGTAAC

Ace file of the UniGene sp_v3.0_unigene51930 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SB36.1\|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g25270, chloroplastic; Flags: Precursor emb\|CAA23068.1\| putative protein [Arabidopsis thaliana] emb\|CAB	-	-	9.0e-24	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	3.583e-07	-

Source	Gene names
Sma3	At4g35130; GSVIVT00026118001; GSVIVT00030057001; GSVIVT00034531001; M4E13.180; PCMP-H27; POPTRDRAFT_561131; POPTRDRAFT_750776; POPTRDRAFT_759883; POPTRDRAFT_801432; POPTRDRAFT_895682; RCOM_0505940; RCOM_0820370; RCOM_0833210;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25270.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:12937253-12938836 REVERSE LENGTH=527	1.0e-29	46%
RefSeq	Arabidopsis thaliana	NP_194257.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-29	46%
RefSeq	Populus trichocarpa	XP_002319950.1	predicted protein [Populus trichocarpa]	2.0e-29	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 278 aas, your sequence is shorter than subject: 116 - 795

Fln protein: KQLPKAGIQADSFTYPLVLKACAGLGSAALQEGKEIHDDIIRRGFESDVFVANSLLAMHAKCGSIELAQQVFDRMPQRDVVSWNSMIVGYGQSGHVNEALRVFGQMRLENVIPNAV

Protein Length: 117

Fln nts: CAAACAACTACCCAAGGCAGGCATACAGGCAGACAGTTTCACATATCCTCTGGTACTCAAGGCTTGCGCTGGGCTCGGTTCGGCAGCTCTGCAAGAGGGAAAAGAGATTCATGATGATATAATCAGAAGAGGGTTTGAGTCGGATGTCTTTGTGGCCAATTCCCTCTTAGCTATGCATGCAAAATGTGGAAGTATAGAGCTTGCACAACAAGTGTTTGACAGAATGCCACAGAGAGATGTTGTTTCATGGAATTCCATGATCGTAGGGTATGGACAGAGTGGACATGTTAATGAGGCCTTGAGAGTTTTTGGTCAAATGAGACTCGAAAATGTAATCCCCAACGCTGTAAC

Fln Alignment:

F51TW9001BHKRH___QLPKAGIQADSFTYPLVLKACAGLGSAALQEGKEIHDDIIRRGFESDVFVANSLLAMHAKCGSIELAQQVFDRMPQRDVVSWNSMIVGYGQSGHVNEALRVFGQMRLENVIPNA
B8LQA8_______________QMQRTGINPDKLVFLSVIKACGS--QSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain