SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51901

Length: 353 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene51901
GATGGACAGGGCATCGATTCTTGGCGATGCGATTGAGTACTTGAAGGAACTTCTGCAGCGTATAAATGATCTCCATACAGAACTGGAAGGGACTTCAGAGAGGCCACTGTCAGCTACTGCCCTGCCTCTACCTCTGAATCTGCCTGTTCCTTCTGCCTTCCATTATCCCTTGACTCCTTCCACGCCACCGCTTATCCCTTGCCGTATCAAGGAAGAATGTCCTCCCATTTCACTGCCTGCGCACTCAGAGGCATCAGATTCTCAGCCTGCAAGGGTACTTGTGATAAAAAGCTACTTATATTTATGAGTTCTCAACTTCTCAGTGATGAATGTTTATAAGTTGTAACGCTTGC

Ace file of the UniGene sp_v3.0_unigene51901 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	inducer of CBF expression 1 protein [Capsella bursa-pastoris]	-	-	3.0e-15	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Inducer of CBF expression 1	-	-	3.873e-12	-

Source	Gene names
Sma3	At1g12860; At3g26744; BHLH116; BHLH33; EN44; EN45; F13K23.12; GSVIVT00018030001; GSVIVT00037942001; ICE1; ICE2; ICE4; ICE5; ICE6; LOC_Os11g32100; MDJ14.1; MLJ15.14; MtrDRAFT_AC149131g32v2; OSJNBa0052O12.3; OSJNBa0093F16.39; Os01g0928000; Os11g0523700; OsI

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	stomatal lineage progression	GO:0010440	Biological Process	-
Sma3	guard mother cell differentiation	GO:0010444	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3		GO:0045941	Biological Process	-
Sma3	response to freezing	GO:0050826	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001092	-	0.0	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G26744.1	ICE1, ATICE1, SCRM basic helix-loop-helix (bHLH) DNA-binding superfamily protein chr3:9832953-9834790 REVERSE LENGTH=494	2.0e-19	55%
RefSeq	Arabidopsis thaliana	NP_001030776.2	transcription factor ICE1 [Arabidopsis thaliana]	2.0e-19	55%
RefSeq	Populus trichocarpa	XP_002321747.1	predicted protein [Populus trichocarpa]	6.0e-19	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A934

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 30 aas, your sequence is shorter than subject: 102 - 175

Fln protein: MDRASILGDAIEYLKELLQRINDLHTELEGTSERPLSATALPLPLNLPVPSAFHYPLTPSTPPLIPCRIKEECPPISLPAHSEASDSQPARVLVIKSYLYL*

Protein Length: 103

Fln nts: GATGGACAGGGCATCGATTCTTGGCGATGCGATTGAGTACTTGAAGGAACTTCTGCAGCGTATAAATGATCTCCATACAGAACTGGAAGGGACTTCAGAGAGGCCACTGTCAGCTACTGCCCTGCCTCTACCTCTGAATCTGCCTGTTCCTTCTGCCTTCCATTATCCCTTGACTCCTTCCACGCCACCGCTTATCCCTTGCCGTATCAAGGAAGAATGTCCTCCCATTTCACTGCCTGCGCACTCAGAGGCATCAGATTCTCAGCCTGCAAGGGTACTTGTGATAAAAAGCTACTTATATTTATGAGTTCTCAACTTCTCAGTGATGAATGTTTATAAGTTGTAACGCTTGC

Fln Alignment:

F51TW9001DAP9M___MDRASILGDAIEYLKELLQRINDLHTEL--EGTSERPLSATALPLPLNL
D5A934_______________MDRASILGDAVEYLKELLQRINDLHIELMAGSSNSKPLVPTMPDFPYRM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain