SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51865

Length: 377 nt

UniGene Fasta

>sp_v3.0_unigene51865
GACATGAGTCATAACCAAGTGATAAAAAATTGCAGAAATAAGGTGATCAAGAAGTCTAGTCGTCCAGTAACTGTGGATGCAATTTTCTGTGCAGGAACATAAAACCTTCTTCTTGGGCCAGAAGATAGTGTTGGGACAGAAAAGTGATGCAATGCAGGAAGAAAAGACAGCGACCTTGGTCTGCAACAGAGGATTGTACTTGGGGACCTCCATATTCCATTTGTTAGATACATTGTCTAGCCAGATGACGTGGAAAATGTAGCCTTGCTGAGCAAGCATACAATCATCATTGGAAGCAAGAAACTTGTACAGTGTTCTCGCATAAGATTATTTGTGTTAATACTTAAGAGTGGTGCTTGGGGTGACAATTGTGCTCT

Ace file of the UniGene sp_v3.0_unigene51865

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Coatomer subunit alpha-2 n=4 Tax=Arabidopsis RepID=COPA2_ARATH	-	-	8.0e-22	53%
FL-Next	sp=Coatomer subunit alpha-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Sma3	Coatomer alpha subunit, putative	-	-	4.891e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	[Myosin heavy-chain] kinase.	EC:2.7.11.7	-	2.579e-06	-

Source	Gene names
Sma3	At1g62020; At2g21390; CM0216.440.nc; F3K23.15; F8K4.21; GSVIVT00004883001; GSVIVT00014508001; POPTRDRAFT_570035; POPTRDRAFT_575095; RCOM_1215590; RCOM_1449180;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G21390.1	Coatomer, alpha subunit chr2:9152428-9156577 FORWARD LENGTH=1218	8.0e-27	53%
RefSeq	Arabidopsis thaliana	NP_179734.1	coatomer subunit alpha-2 [Arabidopsis thaliana]	1.0e-26	53%
RefSeq	Populus trichocarpa	XP_002321558.1	predicted protein [Populus trichocarpa]	7.0e-27	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SJT9

Fln msg: Distance to subject end: 675 aas, your sequence is shorter than subject: 125 - 1218

Fln protein: DMSHNQVIKNCRNKVIKKSSRPVTVDAIFCAGT*NLLLGPEDSVGTEK*CNAGRKDSDLGLQQRIVLGDLHIPFVRYIV*PDDVENVALLSKHTIIIGSKKLVQCSRIRLFVLILKSGAWGDNCA

Protein Length: 126

Fln nts: GACATGAGTCATAACCAAGTGATAAAAAATTGCAGAAATAAGGTGATCAAGAAGTCTAGTCGTCCAGTAACTGTGGATGCAATTTTCTGTGCAGGAACATAAAACCTTCTTCTTGGGCCAGAAGATAGTGTTGGGACAGAAAAGTGATGCAATGCAGGAAGAAAAGACAGCGACCTTGGTCTGCAACAGAGGATTGTACTTGGGGACCTCCATATTCCATTTGTTAGATACATTGTCTAGCCAGATGACGTGGAAAATGTAGCCTTGCTGAGCAAGCATACAATCATCATTGGAAGCAAGAAACTTGTACAGTGTTCTCGCATAAGATTATTTGTGTTAATACTTAAGAGTGGTGCTTGGGGTGACAATTGTGCTCT

Fln Alignment:

F51TW9001APY0W___VIKNCRNKVIKKSSRPVTVDAIFCAGT*NLLLGPEDSVGTEK*CNAGRKDSDLGLQQRIVLGDLHIPFVRYIV*PDDVENVALLSKHTIIIGSKKLV-QCSRIRLFVLILKSGAWGDN
Q9SJT9_______________LVKNLKNEVVKKSSLPIPTDAIFYAGTGNLLCRSEDKVVI------------FDLQQRLVLGELQTPFVRYVVWSNDMESVALLSKHTIIIASKKLVLQCTLHE--TIRVKSGAWDDN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain