SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51828

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene51828
ATGGGGAACGTAGAGAATCCTCGGCTTTCACTTCATTTTGTTTCTCCTTCGACCTCACTAGGGTTAATGGCTCAGATCCACACAATTGCCTTGATCTCATTACTAGGATTCCTATGTATGTCTGTTCCAGCTTATGGATACGGTGGCTGGCAATCCGCACACGCGACGTTCTATGGTGGCGCTGACGCTTCCGGAACTATGGGAGGGGCGTGTGGATACGGTAATCTTTATGGCCAA

Ace file of the UniGene sp_v3.0_unigene51828

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	8.0e-17	70%
FL-Next	tr=Expansin; Pinus taeda (Loblolly pine).	-	-	0.0	70%
Sma3	Expansin	-	-	0.0	-

Source	Gene names
Sma3	AT1G69530; At1g26770; At1g69530; At2g39700; At2g40610; At3g55500; At5g05290; CDK3; CDK4; CDK5; CDK6; CDK7; Cs-EXPA1; EXP; EXP03; EXP1; EXP10; EXP13; EXP14; EXP15; EXP16; EXP18; EXP2; EXP3; EXP4; EXP5; EXP6; EXP7; EXP8; EXPA1; EXPA10; EXPA15; EXPA16; EXPA2

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	syncytium formation	GO:0006949	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	plant-type cell wall loosening	GO:0009828	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69530.3	ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP ALPHA 1.2, EXPA1 expansin A1 chr1:26142034-26143200 FORWARD LENGTH=275	5.0e-18	65%
RefSeq	Arabidopsis thaliana	NP_001185357.1	expansin A1 [Arabidopsis thaliana]	6.0e-18	65%
RefSeq	Populus trichocarpa	XP_002315043.1	hypothetical protein POPTRDRAFT_659295 [Populus trichocarpa]	2.0e-19	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9SWY1

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 79 - 253

Fln protein: MGNVENPRLSLHFVSPSTSLGLMAQIHTIALISLLGFLCMSVPAYGYGGWQSAHATFYGGADASGTMGGACGYGNLYGQ

Protein Length: 80

Fln nts: _-_ATGGGGAACGTAGAGAATCCTCGGCTTTCACTTCATTTTGTTTCTCCTTCGACCTCACTAGGGTTAATGGCTCAGATCCACACAATTGCCTTGATCTCATTACTAGGATTCCTATGTATGTCTGTTCCAGCTTATGGATACGGTGGCTGGCAATCCGCACACGCGACGTTCTATGGTGGCGCTGACGCTTCCGGAACTATGGGAGGGGCGTGTGGATACGGTAATCTTTATGGCCAA

Fln Alignment:

F51TW9001DTNGA___MAQIHTIALISLLGFLCMSVPAYGYGGWQSAHATFYGGADASGTMGGACGYGNLYGQ
Q9SWY1_______________MELVKSIALASLLTFIWLLTGAHGYGGWESAHATFYGGSDASGTMGGACGYGNLYSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain