SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51822

Length: 424 nt

UniGene Fasta

>sp_v3.0_unigene51822
ATGGGGATTTTACATCTTATGCAAGACATGATCCCTGAAGCTCTCTGAACCCATCATCTTCCATCCCGCACAGCATTTAGCTTTCTCGTTTCGGTGACGTATAAGCTCTTCACCATTTTTAAACTCACCTCTCCCATTCTTGCACGTCATCATGTTTATTGCATTTTACGAAGTCCAACGGCCTATAAAACTCCGATGTCCATTACAGCGCTGCATATAGATTTCAGGCATTCTTATTATTGGCTCTGCTGCTAGTTTCTTCGGTTATGGCCTCATCTGGCTCGTCTTGAGCGAGAGAATAAGTCCTCTGCCATATTGGGCGATGTGGCTTGCACTATGCCTTGCTGCAAATAGTGCAACATGGTTCAATACAGCTGTCCTTGTCACCAATATGCGAAATTTCCCTCAAAGCAGAGGCACAGTT

Ace file of the UniGene sp_v3.0_unigene51822

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nodulin-like protein [Citrus trifoliata]	-	-	1.0e-16	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Nodulin-like protein	-	-	7.25e-06	-

Source	Gene names
Sma3	AT4g34950; At4g34950; CTV.14; GSVIVT00005663001; GSVIVT00033229001; GSVIVT00036100001; M4E13.10; OSJNBa0035I03.15; Os06g0179200; Os09g0536700; OsI_21894; OsI_32184; OsJ_20331; OsJ_31482; P0229B10.1-1; P0569E11.23-1; PHYPADRAFT_118495; PHYPADRAFT_178800; P

Source	InterPros	Term	Type	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80530.1	Major facilitator superfamily protein chr1:30278224-30280247 REVERSE LENGTH=561	4.0e-16	57%
RefSeq	Arabidopsis thaliana	NP_178168.1	nodulin family protein [Arabidopsis thaliana]	5.0e-16	57%
RefSeq	Populus trichocarpa	XP_002327403.1	predicted protein [Populus trichocarpa]	8.0e-22	67%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Distance to subject end: 479 aas, atg_distance in limit (1-15): atg_distance = 7, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 68 - 626

Fln protein: ISGILIIGSAASFFGYGLIWLVLSERISPLPYWAMWLALCLAANSATWFNTAVLVTNMRNFPQSRGTV

Protein Length: 69

Fln nts: ATGGGGATTTTACATCTTATGCAAGACATGATCCCTGAAGCTCTCTGAACCCATCATCTTCCATCCCGCACAGCATTTAGCTTTCTCGTTTCGGTGACGTATAAGCTCTTCACCATTTTTAAACTCACCTCTCCCATTCTTGCACGTCATCATGTTTATTGCATTTTACGAAGTCCAACGGCCTATAAAACTCCGATGTCCATTACAGCGCTGCATATAGATTTCAGGCATTCTTATTATTGGCTCTGCTGCTAGTTTCTTCGGTTATGGCCTCATCTGGCTCGTCTTGAGCGAGAGAATAAGTCCTCTGCCATATTGGGCGATGTGGCTTGCACTATGCCTTGCTGCAAATAGTGCAACATGGTTCAATACAGCTGTCCTTGTCACCAATATGCGAAATTTCCCTCAAAGCAGAGGCACAGTT

Fln Alignment:

F51TW9001CRAOM___FFGYGLIWLVLSERISPLPYWAMWLALCLAANSATWFNTAVLVTNMRNFPQSRGTV
B8LRH5_______________FLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain