SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51811

Length: 446 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene51811
GAGTTCATCAACAACATGCCAGTNAAACCCGATGCGACTATGTGGGGAGCAATGCTTGGTGCCTGCAGAGTTCATGGAAATATTGATATGGCCCAAAGAACAGCAGAACGCCTTGTGGAGTTGAAACTGGAAGATTCATCAACATTTGTGTTACTATCAAATACCTATGCCGCTGCTGGTAGATGGGACGATGTGGCCAAGGTGAGAAAATTAATGATAGGTAGAGAGCTGNGAAAACAGCCTGGCTGCAGCTGGATTGAGGTCAAAGCCAAGACACATGTCTTTCATGCCGGAGAAATTTCACACCCACAAAAAGAGGAGATCTATGTAATGCTAGAAAGGTTAGCTGCAGAGATGAAAGCCGTGGGATATGTGCCCGATACTAATTTTGTGCTGCATGATATCGATGAGCATAAAAAGGAACACCATCTTAGCTACCACAGTGA

Ace file of the UniGene sp_v3.0_unigene51811 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Tetratricopeptide-like helical	-	-	9.123e-10	-

Source	Gene names
Sma3	At1g09410; At1g11290; At1g25360; At1g56690; At2g22070; At2g27610; At3g13770; At3g49140; At3g49170; At3g61170; At4g02750; At4g33990; B1032F05.19; B1080A02.28; EMB2261; EMB2758; F10A12.28; F14J9.7; F15K20.29; F17I5.180; F25P12.87; F2K15.2; F2K15.30; F3O9.28

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G09410.1	pentatricopeptide (PPR) repeat-containing protein chr1:3035443-3037560 FORWARD LENGTH=705	49%
RefSeq	Arabidopsis thaliana	NP_172412.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002302000.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 148 - 370

Fln protein: EFINNMPVKPDATMWGAMLGACRVHGNIDMAQRTAERLVELKLEDSSTFVLLSNTYAAAGRWDDVAKVRKLMIGREL*KQPGCSWIEVKAKTHVFHAGEISHPQKEEIYVMLERLAAEMKAVGYVPDTNFVLHDIDEHKKEHHLSYHS

Protein Length: 149

Fln nts: GAGTTCATCAACAACATGCCAGTgAAACCCGATGCGACTATGTGGGGAGCAATGCTTGGTGCCTGCAGAGTTCATGGAAATATTGATATGGCCCAAAGAACAGCAGAACGCCTTGTGGAGTTGAAACTGGAAGATTCATCAACATTTGTGTTACTATCAAATACCTATGCCGCTGCTGGTAGATGGGACGATGTGGCCAAGGTGAGAAAATTAATGATAGGTAGAGAGCTGtGAAAACAGCCTGGCTGCAGCTGGATTGAGGTCAAAGCCAAGACACATGTCTTTCATGCCGGAGAAATTTCACACCCACAAAAAGAGGAGATCTATGTAATGCTAGAAAGGTTAGCTGCAGAGATGAAAGCCGTGGGATATGTGCCCGATACTAATTTTGTGCTGCATGATATCGATGAGCATAAAAAGGAACACCATCTTAGCTACCACAGTGA

Fln Alignment:

F51TW9001BV8UL___FINNMPVKPDATMWGAMLGACRVHGNIDMAQRTAERLVELKLEDSSTFVLLSNTYAAAGRWDDVAKVRKLMIGREL*KQPGCSWIEVKAKTHVFHAGEISHPQKEEIYVMLERLAAEMKAVGYVPDTNFVLHDIDEHKKEHHLSYHS
A9P0W0_______________FINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain