SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51782

Length: 424 nt

UniGene Fasta

>sp_v3.0_unigene51782
ATGGGGGCAGTAGGTGCCCAGATTGAAGGTTTCAATATTTCCCTCAAAAACTGCAAAATTGGGTGCTTTTTTCGGCAGAAATTCTGTGCCATAAAGCAGATTTTTTAGTCTTAAAATACTGCCAATCTGTTGCTGCTTCAGCTCAGGACTGAATTGCGGCTCGTGGGCTACGTGGATTGTCTAATTTCTAGGAGGTCAGAACAGCTAGGAGAAGTAACAGGATATCATGAAGGCCCTCCATATTGGTCGGCGGTTTCGGAACCAGGCTGCGCCCTTTGACGCTGAGTGTCCCTAAGCCTCTGGTTGACTTTGCGAATAAGCCAATGATTTTGCATCAGATTGAAGCACTCAAAGCTATTGGTGTTGATGAAGTTGTGCTAGCTATTAACTATCAGCCTGAGGGTTATGCTGAGCTTCTTGAAGG

Ace file of the UniGene sp_v3.0_unigene51782

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GDP-mannose pyrophosphorylase n=4 Tax=Pinaceae RepID=A6N835_PINTA	-	-	4.0e-22	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	GDP-D-mannose pyrophosphorylase	-	-	2.18e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mannose-1-phosphate guanylyltransferase (GDP).	EC:2.7.7.22	-	7.317e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Fructose and mannose metabolism	00051	7.317e-15	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	7.317e-15	%
Sma3	Metabolic pathways	01100	7.317e-15	%
Sma3	Biosynthesis of secondary metabolites	01110	7.317e-15	%

Source	Gene names
Sma3	AT4g30570; At2g39770; At3g55590; At4g30570; CHLREDRAFT_130417; GMP; GMP1; GMP2; GMPase; GSVIVT00018410001; Gmp; LOC_Os03g16150; OJA1364E02.11; OSJNBa0071M09.2; Os01g0847200; Os03g0268400; Os08g0237200; OsI_10901; OsI_28352; OsJ_04069; OsJ_10274; OsJ_26535

Source	GOs	Term	Type	Identity
Sma3	mannose-1-phosphate guanylyltransferase activity	GO:0004475	Molecular Function	-
Sma3	mannose-1-phosphate guanylyltransferase (GDP) activity	GO:0008928	Molecular Function	-
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	-
Sma3	cellulose biosynthetic process	GO:0030244	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	response to ammonium ion	GO:0060359	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-
Sma3	Hexapeptide transferase, conserved site	IPR018357	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39770.1	CYT1, VTC1, SOZ1, EMB101, GMP1 Glucose-1-phosphate adenylyltransferase family protein chr2:16589401-16590741 FORWARD LENGTH=361	2.0e-27	96%
RefSeq	Arabidopsis thaliana	NP_001189713.1	mannose-1-phosphate guanylyltransferase [Arabidopsis thaliana]	3.0e-27	96%
RefSeq	Populus trichocarpa	XP_002308180.1	predicted protein [Populus trichocarpa]	4.0e-27	98%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ27

Fln msg: Distance to subject end: 295 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 64 - 361

Fln protein: RPSILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYQPEGYAELLE

Protein Length: 65

Fln nts: ATGGGGGCAGTAGGTGCCCAGATTGAAGGTTTCAATATTTCCCTCAAAAACTGCAAAATTGGGTGCTTTTTTCGGCAGAAATTCTGTGCCATAAAGCAGATTTTTTAGTCTTAAAATACTGCCAATCTGTTGCTGCTTCAGCTCAGGACTGAATTGCGGCTCGTGGGCTACGTGGATTGTCTAATTTCTAGGAGGTCAGAACAGCTAGGAGAAGTAACAGGATATC_-_ATGAAGGCCCTCCATATTGGTCGGCGGTTTCGGAACCAGGCTGCGCCCTTTGACGCTGAGTGTCCCTAAGCCTCTGGTTGACTTTGCGAATAAGCCAATGATTTTGCATCAGATTGAAGCACTCAAAGCTATTGGTGTTGATGAAGTTGTGCTAGCTATTAACTATCAGCCTGAGGGTTATGCTGAGCTTCTTGAAGG

Fln Alignment:

F51TW9001D7PEJ___LVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYQPE
B8LQ27_______________LVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYQPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain