SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51723

Length: 441 nt

UniGene Fasta

>sp_v3.0_unigene51723
CAAGTTTGAGACTCTGTCCTACCTCCCTCAGCTAACCGAGGAGCAGCTGGTGAAGGAGGTTGAGTACTTGTTGAGGAACAAGTGGGTGCCTTGTCTAGAGTTTGATCTGGTGAGTTTTTATTTTTTTAAGATTGATTTATGGAGATTTGAACTTTCATACTACGTCGAAAATAAAATAGGTACAAATTTTTATTATGAATTGTGTGTATGTATGTGCGCGCAGGAAGGATCCATCTCGAGGAAGTATAATAGAAGCCCGGGGTACTACGATGGGAGATACTGGGTGATGTGGAAGTTGCCGATGTTTGGGTGCACAGAGGCATCTCAGGTGATAAACGAGGTGAACGAGTGTGCCAAGGCATACCCCAAAGCCTTCATCCGTGTCATTGGCTTTGACAACGTCCGCCAAGTGCAGTGCATCTCCTTCATCGTCCACAAGCC

Ace file of the UniGene sp_v3.0_unigene51723

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribulose bisphosphate carboxylase small chain (Fragment) n=1 Tax=Pinus pinaster RepID=Q8RVI7_PINPS	-	-	0.0	100%
FL-Next	sp=Ribulose bisphosphate carboxylase small chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Sma3	Ribulose-bisphosphate carboxylase.	EC:4.1.1.39	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Metabolic pathways	01100	%

Source	GOs	Term	Type	Identity
Sma3	chloroplast ribulose bisphosphate carboxylase complex	GO:0009573	Cellular Component	-
Sma3	ribulose-bisphosphate carboxylase activity	GO:0016984	Molecular Function	-
Sma3	carbon fixation	GO:0015977	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribulose bisphosphate carboxylase small chain, domain	IPR000894	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67090.1	RBCS1A ribulose bisphosphate carboxylase small chain 1A chr1:25048465-25049249 REVERSE LENGTH=180	51%
RefSeq	Arabidopsis thaliana	NP_176880.1	ribulose bisphosphate carboxylase small chain 1A [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002329284.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZM2

Fln msg: STOP codon was not found. Distance to subject end: 3 aas,

Fln protein: KFETLSYLPQLTEEQLVKEVEYLLRNKWVPCLEFDLVSFYFFKIDLWRFELSYYVENKIGTNFYYELCVCMCAQEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHK

Protein Length: 147

Fln nts: CAAGTTTGAGACTCTGTCCTACCTCCCTCAGCTAACCGAGGAGCAGCTGGTGAAGGAGGTTGAGTACTTGTTGAGGAACAAGTGGGTGCCTTGTCTAGAGTTTGATCTGGTGAGTTTTTATTTTTTTAAGATTGATTTATGGAGATTTGAACTTTCATACTACGTCGAAAATAAAATAGGTACAAATTTTTATTATGAATTGTGTGTATGTATGTGCGCGCAGGAAGGATCCATCTCGAGGAAGTATAATAGAAGCCCGGGGTACTACGATGGGAGATACTGGGTGATGTGGAAGTTGCCGATGTTTGGGTGCACAGAGGCATCTCAGGTGATAAACGAGGTGAACGAGTGTGCCAAGGCATACCCCAAAGCCTTCATCCGTGTCATTGGCTTTGACAACGTCCGCCAAGTGCAGTGCATCTCCTTCATCGTCCACAAGCC

Fln Alignment:

AJ309096___KFETLSYLPQLTEEQLVKEVEYLLRNKWVPCLEFDLVSFYFFKIDLWRFELSYYVENKIGTNFYYELCVCMCAQEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHK
A9NZM2_______________KFETLSYLPRLTQEQLLKEVEYLLRNKWVPCLEFD--------------------------------------EDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain