SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51637

Length: 551 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene51637 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S25 n=4 Tax=Pleosporineae RepID=B2WKH3_PYRTR	-	-	2.0e-26	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	40S ribosomal protein S25	-	-	1.632e-12	-

Source	Gene names
Sma3	At2g16360; At2g21580; At4g34555; At4g39200; F16F14.14; GSVIVT00007016001; OJ1003_C09.15; Os08g0559200; Os09g0568800; Os11g0153800; OsI_32455; OsJ_28274; P0562A06.14; PHYPADRAFT_118815; PHYPADRAFT_126254; PHYPADRAFT_126308; PHYPADRAFT_177001; PHYPADRAFT_56

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S25	IPR004977	-	0.0	-
Sma3	NMD3	IPR007064	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G34555.1	Ribosomal protein S25 family protein chr4:16504381-16505339 REVERSE LENGTH=108	7.0e-15	50%
RefSeq	Arabidopsis thaliana	NP_567968.1	40S ribosomal protein S25-3 [Arabidopsis thaliana]	1.0e-14	50%
RefSeq	Populus trichocarpa	XP_002311010.1	predicted protein [Populus trichocarpa]	4.0e-15	52%

Full-Lengther Next Prediction

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain