SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51603

Length: 282 nt

UniGene Fasta

>sp_v3.0_unigene51603
CTGAAGGTTATTTGCCAGCGAAGCTCTATGATTTAAACTCCAACTACGGGAGCGAGCAACAACTAAAGGATGCCGTGAATGCGTTCCACCGAAAGGGAATTGCGATTATGGGCGACATCGTGATAAACCATCGGTGCGGGACGAAGCGGGACGATAAAGGATATTTGTGCGTGTTTGAGGGTGGGAAGGGGGACAGGACTCTGGACTGGGGACCCTGGGCGGTCACCGTGAATGACAAGCCATATCCGTGCGGCTCCGGCAACGCGGACACCGGAATGGACT

Ace file of the UniGene sp_v3.0_unigene51603

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TG27_PHYPA	-	-	8.0e-24	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Alpha-amylase	-	-	5.211e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-amylase.	EC:3.2.1.1	-	2.409e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		2.409e-23	%
Sma3	Metabolic pathways	01100		2.409e-23	%
Sma3		EC:3.2.1.6-	-	1.963e-07	-

Source	Gene names
Sma3	ALPHA-AMY3; AMY1.1; AMY1.2; AMY1A; AMY2; AT4g25000; Amy46; AmyF1; At4g25000; CUS AMY2; F13M23.140; LOC_Os02g52710; OJ1004_A11.11; OJ1004_A11.13; Os02g0765600; OsI_09066; OsJ_08496; P0539D10.30; P0539D10.32; PHYPADRAFT_115279; PHYPADRAFT_60178; POPTRDRAFT_

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	alpha-amylase activity	GO:0004556	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	starch catabolic process	GO:0005983	Biological Process	-
Sma3	sucrose catabolic process	GO:0005987	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycoside hydrolase, family 13	IPR006046	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	-
Sma3	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	-
Sma3	Alpha-amylase, plant	IPR013775	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25000.1	ATAMY1, AMY1 alpha-amylase-like chr4:12852109-12853825 REVERSE LENGTH=423	1.0e-27	56%
RefSeq	Arabidopsis thaliana	NP_567714.1	alpha-amylase [Arabidopsis thaliana]	2.0e-27	56%
RefSeq	Populus trichocarpa	XP_002301187.1	predicted protein [Populus trichocarpa]	1.0e-28	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM4

Fln msg: Distance to subject end: 266 aas, your sequence is shorter than subject: 93 - 450

Fln protein: EGYLPAKLYDLNSNYGSEQQLKDAVNAFHRKGIAIMGDIVINHRCGTKRDDKGYLCVFEGGKGDRTLDWGPWAVTVNDKPYPCGSGNADTGMD

Protein Length: 94

Fln nts: CTGAAGGTTATTTGCCAGCGAAGCTCTATGATTTAAACTCCAACTACGGGAGCGAGCAACAACTAAAGGATGCCGTGAATGCGTTCCACCGAAAGGGAATTGCGATTATGGGCGACATCGTGATAAACCATCGGTGCGGGACGAAGCGGGACGATAAAGGATATTTGTGCGTGTTTGAGGGTGGGAAGGGGGACAGGACTCTGGACTGGGGACCCTGGGCGGTCACCGTGAATGACAAGCCATATCCGTGCGGCTCCGGCAACGCGGACACCGGAATGGACT

Fln Alignment:

GEM-105-A10___EGYLPAKLYDLNSNYGSEQQLKDAVNAFHRKGIAIMGDIVINHRCGTKRDDKGYLCVFEGGKGDRTLDWGPWAVTVNDKPYPCGSGNADTG
B8LLM4_______________EGYLPQRLYDLNSNYGSEQELRDAVDAFHQKGIGCVSDIVINHRCGTKQDDKGMWCVFEGGAEDGRLDWGPWAVCVNDNPYTCGSGQADTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain