SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51561

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene51561
GGCGGCGATTCATGGGCGAGGAAGGGGAGAAGATGCTGAAGCACCTCCTGTGGTCCAATGGGCGTCAAACAGAAGAAACATCCGCTGACAATAAGCAGTGTGCGGGGAAGGACTTCGTTGGCACTATGGGTCGGCTCTTTCTGGCGCACTTCTTCCTGCGATATGATTCATTTGCCTTAGAAATGCCGTCCTCCTCCTCCTCTGTCAAACTTACGATGCTCACAAAGGGTTCTTTCTT

Ace file of the UniGene sp_v3.0_unigene51561

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 monooxygenase CYP74A3 (Fragment) n=1 Tax=Glycine max RepID=Q2LAJ7_SOYBN	-	-	2.0e-19	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Allene oxide synthase	-	-	4.348e-29	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydroperoxide dehydratase.	EC:4.2.1.92	-	6.938e-16	-

Source	KEGGs	Term	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592	6.938e-16	%
Sma3	Biosynthesis of plant hormones	01070	6.938e-16	%
Sma3	Metabolic pathways	01100	6.938e-16	%

Source	Gene names
Sma3	AOS; AOS2; At5g42650; CYP74A; CYP74A1; CYP74A3; CYP74A7; GSVIVT00014710001; HPL1; LeDES; MJB21.2; PHYPADRAFT_211721; POPTRDRAFT_644172; POPTRDRAFT_677770; RCOM_1593180; aos; aos1; aos2; cyp74C5; des; des1; hpl; hpl2;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	allene oxide synthase activity	GO:0009978	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	hydroperoxide dehydratase activity	GO:0047987	Molecular Function	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G42650.1	AOS, CYP74A, DDE2 allene oxide synthase chr5:17097803-17099359 REVERSE LENGTH=518	7.0e-23	56%
RefSeq	Arabidopsis thaliana	NP_199079.1	allene oxide synthase [Arabidopsis thaliana]	9.0e-23	56%
RefSeq	Populus trichocarpa	XP_002302453.1	cytochrome P450 allene oxide synthase [Populus trichocarpa]	3.0e-21	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKD1

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 78 - 475

Fln protein: RRFMGEEGEKMLKHLLWSNGRQTEETSADNKQCAGKDFVGTMGRLFLAHFFLRYDSFALEMPSSSSSVKLTMLTKGSF

Protein Length: 79

Fln nts: GGCGGCGATTCATGGGCGAGGAAGGGGAGAAGATGCTGAAGCACCTCCTGTGGTCCAATGGGCGTCAAACAGAAGAAACATCCGCTGACAATAAGCAGTGTGCGGGGAAGGACTTCGTTGGCACTATGGGTCGGCTCTTTCTGGCGCACTTCTTCCTGCGATATGATTCATTTGCCTTAGAAATGCCGTCCTCCTCCTCCTCTGTCAAACTTACGATGCTCACAAAGGGTTCTTTCTT

Fln Alignment:

F51TW9001CMMGW___RRFMGEEGEKMLKHLLWSNGRQTEETSADNKQCAGKDFVGTMGRLFLAHFFLRYDSFALEMPSSSSSVKLTMLTKGSF
B8LKD1_______________RRFMGPEGEKMLKHVLWSNGRETDETSADNKQCGGKDIVVMVARLFVAHFFLQYDSYTID--QSSSSVKFTALNKATF

SSRs (tot: 1)

Start position	End position	Sequence	Length
189	202	TCC TCC TCC TCC TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain