SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51506

Length: 438 nt

UniGene Fasta

>sp_v3.0_unigene51506
AGCGCCATCTACGCTTCCTTCTCGAGTCGTAGTATTATCCTATTTGCTTCCCTTCACCATCAGCTAGTTCAGCTGCGAGAATGGCTTCAGCCGTGAGCAGCCGCCGTGAGCTTGAGGACGTCTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCCAAGTCGGAACTGAGTGCCCTGATTTCGGAGGCGGAGATTGAAGGGGTGATGAAAGAGGTGGACTCCAACAAAGATGGATTCATCAACTTCGACGAGTTGGTGGAGGCCAACTCCAAGAACCTCAACGCCGCCAACAGCAACGGCCTCAACGCCGCCCGTCTCATGCTAGGCCTCGCTTCAGCTAATTGATGCCCACGCCGCCCCTTAATTAATAAATAAATAAATATTCCCCTAATCAGCGCTTAGATCTATCATTATATGACGGCTGAATGCATGT

Ace file of the UniGene sp_v3.0_unigene51506

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	1.0e-21	100%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	0.0	100%

Source	Gene names
Sma3	lp8;

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G24620.1	EF hand calcium-binding protein family chr1:8723893-8724453 REVERSE LENGTH=186	1.0e-12	51%
RefSeq	Arabidopsis thaliana	NP_173866.1	putative calcium-binding protein CML25 [Arabidopsis thaliana]	2.0e-12	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O22429

Fln msg: your sequence is shorter than subject: 90 - 166

Fln protein: MASAVSSRRELEDVFRKFDTNGDGKISKSELSALISEAEIEGVMKEVDSNKDGFINFDELVEANSKNLNAANSNGLNAARLMLGLASAN*

Protein Length: 91

Fln nts: AGCGCCATCTACGCTTCCTTCTCGAGTCGTAGTATTATCCTATTTGCTTCCCTTCACCATCAGCTAGTTCAGCTGCGAGA_-_ATGGCTTCAGCCGTGAGCAGCCGCCGTGAGCTTGAGGACGTCTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCCAAGTCGGAACTGAGTGCCCTGATTTCGGAGGCGGAGATTGAAGGGGTGATGAAAGAGGTGGACTCCAACAAAGATGGATTCATCAACTTCGACGAGTTGGTGGAGGCCAACTCCAAGAACCTCAACGCCGCCAACAGCAACGGCCTCAACGCCGCCCGTCTCATGCTAGGCCTCGCTTCAGCTAATTGA___TGCCCACGCCGCCCCTTAATTAATAAATAAATAAATATTCCCCTAATCAGCGCTTAGATCTATCATTATATGACGGCTGAATGCATGT

Fln Alignment:

EPDB_FN705820___ELEDVFRKFDTNGDGKISKSELSALISEAEIEGVMKEVDSNKDGFINFDELVE
O22429_______________ELEDVFRKFDTNGDGKISKSELSALISEAEIEGVMKEVDSNKDGFINFDELVE

SSRs (tot: 1)

Start position	End position	Sequence	Length
372	387	AATA AATA AATA AATA	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain