SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51452

Length: 476 nt

UniGene Fasta

>sp_v3.0_unigene51452
GTCGATGATATTATCATTTGAACTGCCATTTGCTTTAATACCTTTGTTGAAGTTTACGAGCAGTAAGATAAAGATGGGACCTCACAAGAACTCAATTTCAATGATGGTTATTGCCTGGCTGATAGGATGCGCTATGATAGTTATAAACCTCTACTACTTAACCACATCATTTGGAACCTGGTTGTTACATAATAGTCTGCCCAAGGGAGCTTCGGTATTTATAGGAATACTGGTATTTCCATTCATGGCTTTATATATTGTTGGGATACTTTATTTGGCCATTTGACCGGACAGTAAGGTCACTAATGTGGCCCCAGGAGGATCCTCCATGCCAAGCCCAATGGGTACTCCGAACCCTCAACTTGAATTGGAGAGTCAGAATCTCGAAGCTAAATAGATCCCATCATAACTCAGTCACCGAGATTATCACACCCTCCCGCTGAATACAACATGTGACTNTACTGTGTATTTTGATT

Ace file of the UniGene sp_v3.0_unigene51452

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Root-specific metal transporter n=1 Tax=Malus baccata RepID=Q68G88_9ROSA	-	-	3.0e-34	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Sma3	Metal transporter, putative	-	-	3.314e-13	-

Source	Gene names
Sma3	At1g15960; At1g80830; B1153E06.4; F23A5.18; GSVIVT00011628001; GSVIVT00015427001; GSVIVT00015429001; GSVIVT00033760001; NRAMP1; NRAMP5.1; NRAMP6; Nramp1; OJ1007_D04.24; OJ1057_E05.110; OJ1354_H07.109; Os02g0131800; Os06g0676000; Os07g0257200; Os07g0258400

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Natural resistance-associated macrophage protein	IPR001046	-	-
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15960.1	NRAMP6, ATNRAMP6 NRAMP metal ion transporter 6 chr1:5482202-5485066 REVERSE LENGTH=527	2.0e-25	54%
RefSeq	Arabidopsis thaliana	NP_173048.3	metal transporter Nramp6 [Arabidopsis thaliana]	2.0e-25	54%
RefSeq	Populus trichocarpa	XP_002307453.1	nramp transporter [Populus trichocarpa]	2.0e-38	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE42

Fln msg: your sequence is shorter than subject: 95 - 514

Fln protein: SMILSFELPFALIPLLKFTSSKIKMGPHKNSISMMVIAWLIGCAMIVINLYYLTTSFGTWLLHNSLPKGASVFIGILVFPFMALYIVGILYLAI*

Protein Length: 96

Fln nts: GTCGATGATATTATCATTTGAACTGCCATTTGCTTTAATACCTTTGTTGAAGTTTACGAGCAGTAAGATAAAGATGGGACCTCACAAGAACTCAATTTCAATGATGGTTATTGCCTGGCTGATAGGATGCGCTATGATAGTTATAAACCTCTACTACTTAACCACATCATTTGGAACCTGGTTGTTACATAATAGTCTGCCCAAGGGAGCTTCGGTATTTATAGGAATACTGGTATTTCCATTCATGGCTTTATATATTGTTGGGATACTTTATTTGGCCATTTGA___CCGGACAGTAAGGTCACTAATGTGGCCCCAGGAGGATCCTCCATGCCAAGCCCAATGGGTACTCCGAACCCTCAACTTGAATTGGAGAGTCAGAATCTCGAAGCTAAATAGATCCCATCATAACTCAGTCACCGAGATTATCACACCCTCCCGCTGAATACAACATGTGACTaTACTGTGTATTTTGATT

Fln Alignment:

EPDB_AL750916___SMILSFELPFALIPLLKFTSSKIKMGPHKNSISMMVIAWLIGCAMIVINLYYLTTSFGTWLLHNSLPKGASVFIGILVFPFMALYIVGILYLAI
D5AE42_______________NVLQSMQIPFSLIPLLSLVSRQQVMGFFKINLTLKVVAWVVAFLVIIMNGYLLEEFFANEL--------TSMWVMALLIFIIVAYVSFIIYLVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain