SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51345

Length: 551 nt

UniGene Fasta

>sp_v3.0_unigene51345
CACGAAAAGTTGGACAAGCCTAAGGATACGCAGAATTTCATTGACAACAAACTCGTCTCTTCGAAGACGTCGTCATGGATCGAAGTTCATGATCCTGCAACGAACAATGTCATCACGCGTGTCCCTGAGAGTACTGACGATGAACTCCAAGAAGCAGTGAAATCAGCTAAGGCTGCGTTTCCGGGATGGAAGAGGACGAGCATTATTAAGCGTCAGCAAATAATGTTCAAGCTGACGCACTTGATCCGGGAGCATATGGATAATCTTGCGACAAGCATCGTCACGGAGCAAGGAAAAACTTTTGCTGATGCCAAGGGCGATGTTCTTCGTGGACTGCAAGTTTGTGAGACAGCTTGCGGAATCACTACTCAGCTCGGCGGGGAAGTCCTCGAAGTTGCCAAGGACATGGAAACACGCTCCTACCGAAACCCATTGGGTGTTGTAGCAGCCATCTGCCCCTTCAACTTTCCAGCCATGATTCCATTGTGGTCTCTTCCTGTAGCGACCGTCACCGGAAACTGCATAATTGTCAAGCCCTCGGAGCGTGATCC

Ace file of the UniGene sp_v3.0_unigene51345

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	methylmalonate-semialdehyde dehydrogenase [Aspergillus fumigatus Af293] gb\|EAL89507.1\| methylmalonate-semialdehyde dehydrogenase, putative [Aspergillus fumigatus Af293]	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Sma3	Methylmalonate-semialdehyde dehydrogenase, putative	-	-	6.75e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Methylmalonate-semialdehyde dehydrogenase (acylating).	EC:1.2.1.27	-	3.03e-20	-

Source	KEGGs	Term	e value	Identity
Sma3	Valine, leucine and isoleucine degradation	00280	3.03e-20	%
Sma3	Inositol phosphate metabolism	00562	3.03e-20	%
Sma3	Propanoate metabolism	00640	3.03e-20	%
Sma3	Metabolic pathways	01100	3.03e-20	%

Source	Gene names
Sma3	ALDH6A; ALDH6B2; At2g14170; CHLREDRAFT_130434; F15N24.6; GSVIVT00005784001; GSVIVT00005787001; GSVIVT00011632001; MMSDH1; MtrDRAFT_AC148971g31v2; OSJNBb0002L09.9; OSJNBb0084L07.21; Os07g0188800; OsI_25188; OsJ_23385; PHATRDRAFT_23467; PHYPADRAFT_205382; P

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	methylmalonate-semialdehyde dehydrogenase (acylating) activity	GO:0004491	Molecular Function	-
Sma3	valine metabolic process	GO:0006573	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Methylmalonate-semialdehyde dehydrogenase	IPR010061	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G14170.1	ALDH6B2 aldehyde dehydrogenase 6B2 chr2:5977727-5981899 REVERSE LENGTH=607	51%
RefSeq	Arabidopsis thaliana	NP_001077887.1	Methylmalonate-semialdehyde dehydrogenase [acylating] [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002300012.1	predicted protein, partial [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLF5

Fln msg: Distance to subject end: 303 aas, atg_distance in limit (1-15): atg_distance = 11, W2: There is no M at the beginning, your sequence is shorter than subject: 183 - 500

Fln protein: HEKLDKPKDTQNFIDNKLVSSKTSSWIEVHDPATNNVITRVPESTDDELQEAVKSAKAAFPGWKRTSIIKRQQIMFKLTHLIREHMDNLATSIVTEQGKTFADAKGDVLRGLQVCETACGITTQLGGEVLEVAKDMETRSYRNPLGVVAAICPFNFPAMIPLWSLPVATVTGNCIIVKPSERD

Protein Length: 184

Fln nts: CACGAAAAGTTGGACAAGCCTAAGGATACGCAGAATTTCATTGACAACAAACTCGTCTCTTCGAAGACGTCGTCATGGATCGAAGTTCATGATCCTGCAACGAACAATGTCATCACGCGTGTCCCTGAGAGTACTGACGATGAACTCCAAGAAGCAGTGAAATCAGCTAAGGCTGCGTTTCCGGGATGGAAGAGGACGAGCATTATTAAGCGTCAGCAAATAATGTTCAAGCTGACGCACTTGATCCGGGAGCATATGGATAATCTTGCGACAAGCATCGTCACGGAGCAAGGAAAAACTTTTGCTGATGCCAAGGGCGATGTTCTTCGTGGACTGCAAGTTTGTGAGACAGCTTGCGGAATCACTACTCAGCTCGGCGGGGAAGTCCTCGAAGTTGCCAAGGACATGGAAACACGCTCCTACCGAAACCCATTGGGTGTTGTAGCAGCCATCTGCCCCTTCAACTTTCCAGCCATGATTCCATTGTGGTCTCTTCCTGTAGCGACCGTCACCGGAAACTGCATAATTGTCAAGCCCTCGGAGCGTGATCC

Fln Alignment:

EPDB_BX681674___KDTQNFIDNKLVSSKTSSWIEVHDPATNNVITRVPESTDDELQEAVKSAKAAFP--GWKRTSIIKRQQIMFKLTHLIREHMDNLATSIVTEQGKTFADAK-GDVLRGLQVCETACGITTQLGGEVLEVAKDMETRSYRNPLGVVAAICPFNFPAMIPLWSLPVATVTGNCIIVKPSER
B8LLF5_______________KYTKLFINGEFVDSVSGKTFETLDPRTGEAITRVSEAQKEDVDLAVKAARAAFDHGPWPRMSGFERGRILYKYADLVSQHGDELAALETFDNGKPLDMARILDIPYSVEVIRYNAGFADKIHGLTLKMSGQYQGYTLHEPIGVVGQMIPWNFPILTFFSKVSPALACGCTVVIKSAEQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain