SustainPineDB

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Assembly info
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Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51308

Length: 484 nt

UniGene Fasta

>sp_v3.0_unigene51308
TCCCTAAGAAAACAATGTTGATGGTGAATGTGTGGGCTATAGGAAGGGATCCTAAGTGTGGGGGGCAATGCTTCTGAATCAAGCCAGAGAGATCATGGTCGATGAACATGTCAATGTAACAGATCCATCAAATTTCAATATGATACCGTTCGGTGCAGGAAGGAGAGGATGCCCAGGAGCATCGATGGCTATTCCTACGGTTCAGCTTGCATTGGCTCAGTTGTTACAAACTTGTGATTGGAGAGTGGACGGTGATCCGTCCCAGTTGGATATGAGAGAAGCATGTGGATTGAGCATTCCAAGGAAAGTGCCTCTCTCTGCTTTTCCAAAGTTGAGCAGCAGCTTTGCAATGTAATACCTGGGAGGATACAAGCGACGATGCCTTTTCTTCGTTTTTCTTAGTTGGTCATGGTTTCTCTGTTCCAATAATGGAGAAATCTCTAGAATAATCTCCTAATCAATTTTCTGTCGTTAAAACTGTTAT

Ace file of the UniGene sp_v3.0_unigene51308

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome p450 (Fragment) n=6 Tax=Pinus RepID=B0ZQH8_PINTA	-	-	9.0e-34	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Cytochrome P450	-	-	0.0	-

Source	Gene names
Sma3	cyp450;

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G26230.1	CYP71B24 cytochrome P450, family 71, subfamily B, polypeptide 24 chr3:9598200-9599892 REVERSE LENGTH=498	5.0e-15	49%
RefSeq	Arabidopsis thaliana	NP_189254.1	cytochrome P450 71B24 [Arabidopsis thaliana]	6.0e-15	49%
RefSeq	Populus trichocarpa	XP_002330996.1	predicted protein [Populus trichocarpa]	1.0e-13	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS63

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 118 - 526

Fln protein: P*ENNVDGECVGYRKGS*VWGAMLLNQAREIMVDEHVNVTDPSNFNMIPFGAGRRGCPGASMAIPTVQLALAQLLQTCDWRVDGDPSQLDMREACGLSIPRKVPLSAFPKLSSSFAM*

Protein Length: 119

Fln nts: TCCCTAAGAAAACAATGTTGATGGTGAATGTGTGGGCTATAGGAAGGGATCCTAAGTGTGGGGGGCAATGCTTCTGAATCAAGCCAGAGAGATCATGGTCGATGAACATGTCAATGTAACAGATCCATCAAATTTCAATATGATACCGTTCGGTGCAGGAAGGAGAGGATGCCCAGGAGCATCGATGGCTATTCCTACGGTTCAGCTTGCATTGGCTCAGTTGTTACAAACTTGTGATTGGAGAGTGGACGGTGATCCGTCCCAGTTGGATATGAGAGAAGCATGTGGATTGAGCATTCCAAGGAAAGTGCCTCTCTCTGCTTTTCCAAAGTTGAGCAGCAGCTTTGCAATGTAA___TACCTGGGAGGATACAAGCGACGATGCCTTTTCTTCGTTTTTCTTAGTTGGTCATGGTTTCTCTGTTCCAATAATGGAGAAATCTCTAGAATAATCTCCTAATCAATTTTCTGTCGTTAAAACTGTTAT

Fln Alignment:

EPDB_BX680223___VWGAMLLN-QAREIMVDEHVNVTDPSNFNMIPFGAGRRGCPGASMAIPTVXXXXXXXXXTCDWRVDGDPSQLDMREACGLSIPRKVPLSAFPKLSSSFAM
C0PS63_______________VWGAYASDFKPERFMENEHINLTDQSDFSMIPFGSGRRGCPGASMAIPTIELALAQLLHTFDWRVEGDPSRLDMKEACGLTIPRQVPLCAYPSLRVSFPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain