SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51294

Length: 281 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene51294
GATCTTTTCGCTGCTAATGAACTCGGGGATGGGAATCGTGGAGGATGCGACGGCTGTTATAGCCCAGGTAGCCGGCTGCGGAGAGAGCGAAAAGGCTTTTGAAAAGATTCATGGGATTGAAGTACTGGTGTCTTTGTTGGACACCGGGACTCCTAGGGTTCGGGAGAACGCGGCGTCGGCGTTGCTGAATTTGGCCCAGTGCGGAGGGAAGCAGGTTGCAGATGATATCTTGGATGTGCAGAGCGCCATGCCGGCTCTTAGTCTGCTGCTCACACTCCAGG

Ace file of the UniGene sp_v3.0_unigene51294 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	GSVIVT00030906001; OsJ_04810; POPTRDRAFT_797083; POPTRDRAFT_800231; RCOM_1452200; VITISV_005390;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo	IPR000225	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G08315.1	ARM repeat superfamily protein chr1:2620500-2621477 REVERSE LENGTH=325	5.0e-17	51%
RefSeq	Arabidopsis thaliana	NP_849613.1	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	6.0e-17	51%
RefSeq	Populus trichocarpa	XP_002299200.1	predicted protein [Populus trichocarpa]	2.0e-22	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB80

Fln msg: Distance to subject end: 26 aas, your sequence is shorter than subject: 93 - 297

Fln protein: IFSLLMNSGMGIVEDATAVIAQVAGCGESEKAFEKIHGIEVLVSLLDTGTPRVRENAASALLNLAQCGGKQVADDILDVQSAMPALSLLLTLQ

Protein Length: 94

Fln nts: GATCTTTTCGCTGCTAATGAACTCGGGGATGGGAATCGTGGAGGATGCGACGGCTGTTATAGCCCAGGTAGCCGGCTGCGGAGAGAGCGAAAAGGCTTTTGAAAAGATTCATGGGATTGAAGTACTGGTGTCTTTGTTGGACACCGGGACTCCTAGGGTTCGGGAGAACGCGGCGTCGGCGTTGCTGAATTTGGCCCAGTGCGGAGGGAAGCAGGTTGCAGATGATATCTTGGATGTGCAGAGCGCCATGCCGGCTCTTAGTCTGCTGCTCACACTCCAGG

Fln Alignment:

EPDB_BX679221___IFSLLMNSGMGIVEDATAVIAQVAGCGESEKAFEKIHGIEVLVSLLDTGTPRVRENAASALLNLAQCGGKQVADDILDVQSAMPALSLLLT
D5AB80_______________IFSLLMNAGMGILEDATAVIAQVAGCSESEKVFKKIFGIEVLVDLLATGSPRVQENAASALLNLAQCGG--IADDILDVQFAMPALSLLLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain