SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51280

Length: 334 nt

UniGene Fasta

>sp_v3.0_unigene51280
AGACTTCCCATATAAACACCAGGCCGTTCTTTCTTTCCAGCCACCCAGCTGCACCAGAGCGTTATAGTAGTAGAATTCTTTGGGAATGGGTAGGTGTATGCTTCTTGTATGTGTACTGCTTCTGATTGATTTGTGTTCCTCAGTATTGGTGGAACACCAGCCTCTTGTTGTAACATATCACAACGGTCCCCTGCTCACCACCAAATCCATTGTGGATGTCTATGTAATTTGGTATGGCAGATTTAGCCCTTCTCAACGCTCCATCGTGGGAGATTTTGTGCAGTCTTTGGAAGCTAGCAAGGCCATGGAACCATCTGTGTATAGCTGGTGGAAA

Ace file of the UniGene sp_v3.0_unigene51280

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein EXORDIUM like 2 [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana]	-	-	3.0e-11	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64260.1	EXL2 EXORDIUM like 2 chr5:25703980-25704897 FORWARD LENGTH=305	2.0e-15	53%
RefSeq	Arabidopsis thaliana	NP_201231.1	protein EXORDIUM like 2 [Arabidopsis thaliana]	2.0e-15	53%
RefSeq	Populus trichocarpa	XP_002307366.1	predicted protein [Populus trichocarpa]	2.0e-17	54%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLQ8

Fln msg: Distance to subject end: 224 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 83 - 320

Fln protein: MGRCMLLVCVLLLIDLCSSVLVEHQPLVVTYHNGPLLTTKSIVDVYVIWYGRFSPSQRSIVGDFVQSLEASKAMEPSVYSWWK

Protein Length: 84

Fln nts: AGACTTCCCATATAAACACCAGGCCGTTCTTTCTTTCCAGCCACCCAGCTGCACCAGAGCGTTATAGTAGTAGAATTCTTTGGGA_-_ATGGGTAGGTGTATGCTTCTTGTATGTGTACTGCTTCTGATTGATTTGTGTTCCTCAGTATTGGTGGAACACCAGCCTCTTGTTGTAACATATCACAACGGTCCCCTGCTCACCACCAAATCCATTGTGGATGTCTATGTAATTTGGTATGGCAGATTTAGCCCTTCTCAACGCTCCATCGTGGGAGATTTTGTGCAGTCTTTGGAAGCTAGCAAGGCCATGGAACCATCTGTGTATAGCTGGTGGAAA

Fln Alignment:

EPDB_BX678624___LGMGRCMXXXXXXXXXXXXXXXXXEHQPLVVTYHNGPLLTTKSIVDVYVIWYGRFSPSQRSIVGDFVQSLEASKAMEPSVYSWWK
A9NLQ8_______________LGMGGCQLLLCLILLIDLCSSVLVEQQPLVLTYHNGPLLTTIPTVDVHLIWYGRFSPAQRSIVGDFVQSLEASKATEPSVYSWWK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain