SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51249

Length: 426 nt

UniGene Fasta

>sp_v3.0_unigene51249
GTATTGCCCAAAAGCCAGTAAAATGAGTACACACAAAAATTATCCCTGCCTACACCTTCATATGATTTTACAAAAGAGGGCCCTTCACATAATCCAAGGTTCAGGGCGTCTGTTCTTGTTAATGGTAAAAGGTATGATTCTAAATCAGAATTTTAACTAGTAAGGAGGCCGAGCATGATGCTGCACGAGTTGCTCTGGAAGACCTGAATGCCAATGGAACCACTTCTTTGCCTAATTCAGTGGTATGCATTTTATGCTGTATTTTGAAATCTCCTATTAAATGTACTATACGTGTGCTAGATGCTTCCTAATGCACATTATTTATGGTACATCAGTGTGAGGCTGGGCAATGGAAGAATGTTCTTCAGCAGCATGCACAAAAATTGAAGCTTCCACTGCCTACTTATACTTGCATGAAAACTGGAG

Ace file of the UniGene sp_v3.0_unigene51249

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA-binding protein 5 n=1 Tax=Oryza sativa Japonica Group RepID=DRB5_ORYSJ	-	-	5.0e-10	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G26932.1	DRB3 dsRNA-binding protein 3 chr3:9930460-9931714 REVERSE LENGTH=359	6.0e-12	47%
RefSeq	Arabidopsis thaliana	NP_001030779.2	dsRNA-binding protein 3 [Arabidopsis thaliana]	7.0e-12	47%
RefSeq	Populus trichocarpa	XP_002307335.1	predicted protein, partial [Populus trichocarpa]	9.0e-11	56%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUQ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 205 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 45 - 346

Fln protein: NEYTQKLSLPTPSYDFTKEGPSHNPRFRASVLVNGKRYDSKSEF*

Protein Length: 46

Fln nts: GTATTGCCCAAAAGCCAGTAAA_-_ATGAGTACACACAAAAATTATCCCTGCCTACACCTTCATATGATTTTACAAAAGAGGGCCCTTCACATAATCCAAGGTTCAGGGCGTCTGTTCTTGTTAATGGTAAAAGGTATGATTCTAAATCAGAATTTTAACTAGTAAGGAGGCCGAGCATGATGCTGCACGAGTTGCTCTGGAAGACCTGAATGCCAATGGAACCACTTCTTTGCCTAATTCAGTGGTATGCATTTTATGCTGTATTTTGAAATCTCCTATTAAATGTACTATACGTGTGCTAGATGCTTCCTAATGCACATTATTTATGGTACATCAGTGTGAGGCTGGGCAATGGAAGAATGTTCTTCAGCAGCATGCACAAAAATTGAAGCTTCCACTGCCTACTTATACTTGCATGAAAACTGGAG

Fln Alignment:

EPDB_CR393985___KSQ*NEYTQKLSLPTPSYDFTKEGPSHNPRFRASVLVNGKRYDSKSEF
A9NUQ0_______________KGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain