SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51240

Length: 495 nt

UniGene Fasta

>sp_v3.0_unigene51240
ATGCGCATTGAAACGGCAATGGCGAAGACCGATCAGTACTCCGCCCTTCTTGCTCTGTTACTTTGTGCTGGTTTGGCAGCGGGTGTTAATGGGGCTCTTGAAGTGGGTTTCTACGATCACAGTTGTCCAAAAGCGGAATCCACTGTGTTCGAGGTTGTGAGACATGCATTCCTGAAGAGTCGAGAAGTAGCTCCTGGACTCATAAGAATGCATTTCCATGATTGTTTCGTCAGGGGATGCGATGGGTCTGTTCTCATAGATTCCACTGCCAACAACACTGCGGAGAAAGATAGCCCTGTTAACAATCCGAGCCTTCACGGATATGACGTGATTGACACAGCGAAATCGAGATTAGAGGCGATCTGCCCAAACACTGTTTCTTGTGCAGATATCATAGCATTTGCTGCCAGAGATAGCACAAAGCTGGCATCGCCACATAAATATACTCTGAGCTGGGATGTTCCTGCTGGACGAAGGGATGGAATTATTTCACTG

Ace file of the UniGene sp_v3.0_unigene51240

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxidase prx12 precursor [Spinacia oleracea]	-	-	9.94922e-44	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Putative peroxidase	-	-	1.098e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AP22.54; AoPOX1; At2g41480; At4g11290; At4g36430; At5g39580; At5g42180; At5g51890; B1135C02.24-1; B1135C02.43; B1135C02.47; C7A10.930; DIDI 6G-3B; F8L21.80; GSVIVT00003644001; GSVIVT00004228001; GSVIVT00011734001; GSVIVT00013661001; GSVIVT00015159001; GSV

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G42180.1	Peroxidase superfamily protein chr5:16852702-16854021 FORWARD LENGTH=317	8.0e-39	53%
RefSeq	Arabidopsis thaliana	NP_199033.1	peroxidase 64 [Arabidopsis thaliana]	1.0e-38	53%
RefSeq	Populus trichocarpa	XP_002317837.1	predicted protein [Populus trichocarpa]	0.0	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: Distance to subject end: 169 aas, your sequence is shorter than subject: 165 - 324

Fln protein: MRIETAMAKTDQYSALLALLLCAGLAAGVNGALEVGFYDHSCPKAESTVFEVVRHAFLKSREVAPGLIRMHFHDCFVRGCDGSVLIDSTANNTAEKDSPVNNPSLHGYDVIDTAKSRLEAICPNTVSCADIIAFAARDSTKLASPHKYTLSWDVPAGRRDGIISL

Protein Length: 166

Fln nts: _-_ATGCGCATTGAAACGGCAATGGCGAAGACCGATCAGTACTCCGCCCTTCTTGCTCTGTTACTTTGTGCTGGTTTGGCAGCGGGTGTTAATGGGGCTCTTGAAGTGGGTTTCTACGATCACAGTTGTCCAAAAGCGGAATCCACTGTGTTCGAGGTTGTGAGACATGCATTCCTGAAGAGTCGAGAAGTAGCTCCTGGACTCATAAGAATGCATTTCCATGATTGTTTCGTCAGGGGATGCGATGGGTCTGTTCTCATAGATTCCACTGCCAACAACACTGCGGAGAAAGATAGCCCTGTTAACAATCCGAGCCTTCACGGATATGACGTGATTGACACAGCGAAATCGAGATTAGAGGCGATCTGCCCAAACACTGTTTCTTGTGCAGATATCATAGCATTTGCTGCCAGAGATAGCACAAAGCTGGCATCGCCACATAAATATACTCTGAGCTGGGATGTTCCTGCTGGACGAAGGGATGGAATTATTTCACTG

Fln Alignment:

EPDB_CR393511___EVGFYDHSCPKAESTVFEVVRHAFLKSREVAPGLIRMHFHDCFVRGCDGSVLIDSTANNTAEKDSPVNNPSLHGYDVIDTAKSRLEAICPNTVSCADIIAFAARDST-KLASPHKYTLSWDVPAGRRDGIISL
A9P1P4_______________ELNFYDKTCPGVSNVVEAVIAHYISKAPTLAAPLLRMHFHDCFVRGCDGSVLLNSTKSRKAEKEA-APNLTLRGFQVIDAAKAAVEKVCPGVVSCADILALVARDAVHMLGGPF-----WNVPTGRRDGVVSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain