SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51190

Length: 284 nt

UniGene Fasta

>sp_v3.0_unigene51190
TAACCATTCCAAAGTCTTTGCCGAGATCTTTTGAATCTGCTGATATAGACAGTATGCCAAGTCTTATGCCTAAAGAAAGAACAACATCAGGGGTTCCAGTGAAGGGTTTGCATCCTCTAGAAGAGTTTGATTTGGGTGATATTGTCTGGGCTAAGTCTGGAAGGCGTGGTGATCCTGCCTGGCCTGCTAAAGTTATCGATCCAATCCAAGAGGCTCCAGATGCAGTTTTGAGTGTTTGTGTTCCAGGGCGGTTATGCGTTATGTTTTTTGGCCATTCTTCGGGA

Ace file of the UniGene sp_v3.0_unigene51190

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone-lysine N-methyltransferase ATX3 [Arabidopsis thaliana] sp\|Q9M364.2\|ATX3_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX3; AltName: Full=Protein SET DOMAIN GROUP 14; AltName: Full=Trithorax-homolog protein 3; Short=TRX-homolog protein 3	-	-	3.0e-16	60%
FL-Next	sp=Histone-lysine N-methyltransferase ATX3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Sma3	Trithorax, putative	-	-	3.223e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	8.631e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		8.631e-09	%

Source	Gene names
Sma3	ATX3; At3g61740; F15G16.130; GSVIVT00027049001; GSVIVT00037113001; Os01g0218800; OsI_00917; P0489G09.14; POPTRDRAFT_755392; RCOM_0718450; RCOM_1579260; SDG14; SET14;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PWWP	IPR000313	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Post-SET domain	IPR003616	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61740.1	SDG14, ATX3 SET domain protein 14 chr3:22851133-22856548 REVERSE LENGTH=1018	1.0e-20	60%
RefSeq	Arabidopsis thaliana	NP_001078326.1	histone-lysine N-methyltransferase ATX3 [Arabidopsis thaliana]	2.0e-20	60%
RefSeq	Populus trichocarpa	XP_002302629.1	hypothetical protein POPTRDRAFT_755392 [Populus trichocarpa]	2.0e-19	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M364

Fln msg: Distance to subject end: 780 aas, your sequence is shorter than subject: 94 - 1018

Fln protein: TIPKSLPRSFESADIDSMPSLMPKERTTSGVPVKGLHPLEEFDLGDIVWAKSGRRGDPAWPAKVIDPIQEAPDAVLSVCVPGRLCVMFFGHSSG

Protein Length: 95

Fln nts: TAACCATTCCAAAGTCTTTGCCGAGATCTTTTGAATCTGCTGATATAGACAGTATGCCAAGTCTTATGCCTAAAGAAAGAACAACATCAGGGGTTCCAGTGAAGGGTTTGCATCCTCTAGAAGAGTTTGATTTGGGTGATATTGTCTGGGCTAAGTCTGGAAGGCGTGGTGATCCTGCCTGGCCTGCTAAAGTTATCGATCCAATCCAAGAGGCTCCAGATGCAGTTTTGAGTGTTTGTGTTCCAGGGCGGTTATGCGTTATGTTTTTTGGCCATTCTTCGGGA

Fln Alignment:

CL22260Contig1___MPKERTTSGVPVKGLHPLEEFDLGDIVWAKSGRRGDPAWPAKVIDPIQEAPDAVLSVCVPGRLCVMFFGHS
Q9M364_______________MPKKSDASR---KGVYKPEEFTVGDLVWAKCGKRF-PAWPAVVIDPISQAPDGVLKHCVPGAICVMFFGYS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain