SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51165

Length: 162 nt

UniGene Fasta

>sp_v3.0_unigene51165
GATCAAGGAAGTATCTCAACAGTCTCTAACAAGAGACAGAGGGTACCTTACAATCCAGCAGAGTTGGCTGCTATGGAGGTTAGAGGAATTGAGTGCATCAGGCGCTTGCTCAGGAGGTCTGGCGAGGCACTTTTACTTCTGCAACTTCTTTCTCAACACCAT

Ace file of the UniGene sp_v3.0_unigene51165

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	7.0e-05	47%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	84%

Source	Gene names
Sma3	B1386G10.12; GSVIVT00030587001; Os06g0305200; OsI_22677; OsJ_21091; RCOM_0598070; VITISV_006417; VITISV_010121; VITISV_042526;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	structural constituent of nuclear pore	GO:0017056	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	nucleocytoplasmic transport	GO:0006913	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Nucleoporin, Nup155-like	IPR004870	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1K5K5

Fln msg: Distance to subject end: 667 aas, your sequence is shorter than subject: 54 - 1485

Fln protein: DQGSISTVSNKRQRVPYNPAELAAMEVRGIECIRRLLRRSGEALLLLQLLSQHH

Protein Length: 55

Fln nts: GATCAAGGAAGTATCTCAACAGTCTCTAACAAGAGACAGAGGGTACCTTACAATCCAGCAGAGTTGGCTGCTATGGAGGTTAGAGGAATTGAGTGCATCAGGCGCTTGCTCAGGAGGTCTGGCGAGGCACTTTTACTTCTGCAACTTCTTTCTCAACACCAT

Fln Alignment:

CL21949Contig1___SNKRQRVPYNPAELAAMEVRGIECIXXXXXXXXXXXXXXXXXSQHH
I1K5K5_______________SNKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain