SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51086

Length: 185 nt

UniGene Fasta

>sp_v3.0_unigene51086
ACAAATATGATGACTTCGTATCAGTGAAGAACAAGTACAATGGACCGACGATGTTCTGGGAATAGGGAATACGGGAGTGATCATATGGAAGGATGGATGTGCTCTCGAAGGACTCTGCGTGTGCTCAGAAGATGTGCACTGTGCTCCTACAAAAGGCTACTTCTGCAAACCGGGCAGAATTTACA

Ace file of the UniGene sp_v3.0_unigene51086

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D-arabinono-1,4-lactone oxidase family protein n=3 Tax=Arabidopsis RepID=O81032_ARATH	-	-	9.0e-16	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	ECs	Term	Type	e value	Identity
Sma3	L-gulonolactone oxidase.	EC:1.1.3.8	-	1.176e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		1.176e-08	%
Sma3	Metabolic pathways	01100		1.176e-08	%

Source	Gene names
Sma3	At2g46740; At2g46750; At2g46760; At5g56490; GSVIVT00026155001; Os02g0124400; Os02g0124600; OsI_05664; OsI_05665; OsJ_05196; OsJ_05197; RCOM_0131480; RCOM_0732560; STB1_57t00023;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	D-arabinono-1,4-lactone oxidase activity	GO:0003885	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46760.1	D-arabinono-1,4-lactone oxidase family protein chr2:19213028-19215166 REVERSE LENGTH=603	4.0e-21	74%
RefSeq	Arabidopsis thaliana	NP_182199.1	D-arabinono-1,4-lactone oxidase family protein [Arabidopsis thaliana]	5.0e-21	74%
RefSeq	Populus trichocarpa	XP_002302668.1	predicted protein [Populus trichocarpa]	2.0e-17	62%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW10

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 61 - 500

Fln protein: QI**LRISEEQVQWTDDVLGIGNTGVIIWKDGCALEGLCVCSEDVHCAPTKGYFCKPGRIY

Protein Length: 62

Fln nts: ACAAATATGATGACTTCGTATCAGTGAAGAACAAGTACAATGGACCGACGATGTTCTGGGAATAGGGAATACGGGAGTGATCATATGGAAGGATGGATGTGCTCTCGAAGGACTCTGCGTGTGCTCAGAAGATGTGCACTGTGCTCCTACAAAAGGCTACTTCTGCAAACCGGGCAGAATTTACA

Fln Alignment:

CL20943Contig1___WTDDVLGIGNTGVIIWKDGCALEGLCVCSEDVHCAPTKGYFCKPGRIY
A9NW10_______________WTDDVLGIGEAGVIIWKDGCALEGLCVCSEDSHCAPTEGYFCKPGRIY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain