SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51074

Length: 336 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene51074
TGGGACCTCTCAGGGAAAACGGCGATCTTCTTTTTTTCCCAAAGAAGAATGAGGAGGAGGCCATAATATACGTTAATGGCAAGCGGTTGGTACTTAATGATGGACTGGCTCATCTTACTCTTCTCGAATATTTGAGAGGCTTGGGACTCACTGGGACAAAACTTGGGTGTGGGGAAGGTGGGTGTGGGGCATGTACTGTTATGTTGTCTTGCTATAATCCAGTTAAACAACGAACTGTCCATCGGGCAATCAATGCATGTTTGGCTCCACTGTATTCGGTGGAAGGTATGCATGTAATCACAGTGGAGGGTATTGGGAATCAGCATCAAGGTTTGC

Ace file of the UniGene sp_v3.0_unigene51074 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xanthine dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RIB6_RICCO	-	-	1.0e-16	46%
FL-Next	sp=Xanthine dehydrogenase; Oryza sativa subsp. japonica (Rice).	-	-	0.0	76%
Sma3	Xanthine dehydrogenase	-	-	6.74e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 1.17.1.4.	EC:1.1.1.204	-	3.37e-08	-

Source	Gene names
Sma3	AT4g34890; AT4g34900; At4g34890; At4g34900; At4g34900/F11I11_140; CHLREDRAFT_117669; GSVIVT00024622001; LOC_Os03g31550; MICPUN_83794; OSJNBa0091B22.11; Os03g0429800; OsI_12147; OsJ_11360; PHATRDRAFT_15968; POPTRDRAFT_804467; RCOM_1577610; T11I11.130; T11I

Source	GOs	Term	Type	Identity
Sma3	xanthine dehydrogenase activity	GO:0004854	Molecular Function	-
Sma3	xanthine oxidase activity	GO:0004855	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	purine base catabolic process	GO:0006145	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	IPR000674	-	-
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Molybdopterin dehydrogenase, FAD-binding	IPR002346	-	-
Sma3	[2Fe-2S]-binding	IPR002888	-	-
Sma3	CO dehydrogenase flavoprotein, C-terminal	IPR005107	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding	IPR008274	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Xanthine dehydrogenase, small subunit	IPR014307	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-binding, type 2, subdomain 1	IPR016167	-	-
Sma3	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2	IPR016169	-	-
Sma3	Aldehyde oxidase/xanthine dehydrogenase	IPR016208	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G34890.1	ATXDH1, XDH1 xanthine dehydrogenase 1 chr4:16618736-16624983 REVERSE LENGTH=1361	6.0e-18	63%
RefSeq	Arabidopsis thaliana	NP_195215.2	xanthine dehydrogenase 1 [Arabidopsis thaliana]	8.0e-18	63%
RefSeq	Populus trichocarpa	XP_002314067.1	xanthine dehydrogenase [Populus trichocarpa]	5.0e-21	66%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q6AUV1

Fln msg: Distance to subject end: 1256 aas, atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning, your sequence is shorter than subject: 111 - 1369

Fln protein: GPLRENGDLLFFPKKNEEEAIIYVNGKRLVLNDGLAHLTLLEYLRGLGLTGTKLGCGEGGCGACTVMLSCYNPVKQRTVHRAINACLAPLYSVEGMHVITVEGIGNQHQGL

Protein Length: 112

Fln nts: TGGGACCTCTCAGGGAAAACGGCGATCTTCTTTTTTTCCCAAAGAAGAATGAGGAGGAGGCCATAATATACGTTAATGGCAAGCGGTTGGTACTTAATGATGGACTGGCTCATCTTACTCTTCTCGAATATTTGAGAGGCTTGGGACTCACTGGGACAAAACTTGGGTGTGGGGAAGGTGGGTGTGGGGCATGTACTGTTATGTTGTCTTGCTATAATCCAGTTAAACAACGAACTGTCCATCGGGCAATCAATGCATGTTTGGCTCCACTGTATTCGGTGGAAGGTATGCATGTAATCACAGTGGAGGGTATTGGGAATCAGCATCAAGGTTTGC

Fln Alignment:

CL20830Contig1___EAIIYVNGKRLVLNDGLAHXXXXXXXXXXXXXXXXXXXXXXXXXXXTVMLSCYNPVKQRTVHRAINACLAPLYSVEGMHVITVEGIGNQHQGL
Q6AUV1_______________EAVVYVNGVRRVLPDGLAHLTLLQYLRDIGLPGTKLGCGEGGCGACTVMVSCYDQTTKKTQHFAINACLAPLYSVEGMHIITVEGIGNRQRGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain