SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50988

Length: 395 nt

UniGene Fasta

>sp_v3.0_unigene50988
AGATTGCAATACATCATGTGCGCGAAGATGCAAGGAAGCATTCCGCCATAATGTATGTTTTGTAGGTTGCGGTACATGCTGTGCCAAATGCACCTGTGTTCCTCCGGGGATATCGGGCGTCCAGGATCTCTGCCCCTGCTATGCGAATTTGAAAACGCATCGCAAGAAACCCAAGTGCCCTTAAGTATGATATATACAGTACCAATTGCAGATGTATGCTTAAGATAATATAAACGCATCTATGACTATGCTTATGATGGAATAAACCTAAGTGTTCGTGAATATGATATATAAACTATGCGTTATGAAGGTGTGCACTTCATATTATAGATACACCTGTCCATACTTATAACACAAAGCCTATTGGTCTATCCACCTTTGGAATGTACATATTG

Ace file of the UniGene sp_v3.0_unigene50988

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02704, GASA, Gibberellin regulated protein	-	-	3.0e-26	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%

Source	Gene names
Sma3	GSVIVT00031825001;

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22690.1	Gibberellin-regulated family protein chr1:8027328-8027961 FORWARD LENGTH=119	4.0e-22	56%
RefSeq	Arabidopsis thaliana	NP_001185066.1	putative gibberellin-regulated protein [Arabidopsis thaliana]	5.0e-22	56%
RefSeq	Populus trichocarpa	XP_002307719.1	predicted protein [Populus trichocarpa]	4.0e-23	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKH2

Fln msg: your sequence is shorter than subject: 61 - 109

Fln protein: DCNTSCARRCKEAFRHNVCFVGCGTCCAKCTCVPPGISGVQDLCPCYANLKTHRKKPKCP*

Protein Length: 62

Fln nts: AGATTGCAATACATCATGTGCGCGAAGATGCAAGGAAGCATTCCGCCATAATGTATGTTTTGTAGGTTGCGGTACATGCTGTGCCAAATGCACCTGTGTTCCTCCGGGGATATCGGGCGTCCAGGATCTCTGCCCCTGCTATGCGAATTTGAAAACGCATCGCAAGAAACCCAAGTGCCCTTAA___GTATGATATATACAGTACCAATTGCAGATGTATGCTTAAGATAATATAAACGCATCTATGACTATGCTTATGATGGAATAAACCTAAGTGTTCGTGAATATGATATATAAACTATGCGTTATGAAGGTGTGCACTTCATATTATAGATACACCTGTCCATACTTATAACACAAAGCCTATTGGTCTATCCACCTTTGGAATGTACATATTG

Fln Alignment:

CL19685Contig1___DCNTSCARRCKEAFRHNVCFVGCGTCCAKCTCVPPGISGVQDLCPCYANLKTHRKKPKCP
A9NKH2_______________DCNAACGQRCKEASRHKVCLRACGTCCAKCNCVPPGTSGNKDVCPCYASLKTHGNKPKCP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain