SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50931

Length: 1450 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene50931

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin beta-2/beta-3 chain n=340 Tax=Eukaryota RepID=TBB2_ARATH	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Tubulin beta chain, putative	-	-	-

Source	Gene names
Sma3	RCOM_1495920;

Source	InterPros	Term	Type	Identity
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G23860.1	TUB8 tubulin beta 8 chr5:8042962-8044528 FORWARD LENGTH=449	95%
RefSeq	Arabidopsis thaliana	NP_001190373.1	tubulin beta-8 chain [Arabidopsis thaliana]	95%
RefSeq	Populus trichocarpa	XP_002313404.1	tubulin, beta chain [Populus trichocarpa]	94%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABQ9

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 406 - 445

Fln protein: MREILHIQGGQCGNQIGAKFWEVVCTEHGIDPTGSYQGTTDIQLERVNVYYNVKSTVCDIPPTGLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEM

Protein Length: 407

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGATACTACTTTGCTTAGCAGGCCATTCTGTGTTCAAACGTTTGGCTTGAATTTTTCTGTTAGTTGTCTTTTTATTGATCAGGTCATCATCTTGATCTCTCTGCACCAGTGCTTGGGCTTGAATTTTACTGCTAGTAGTCTTTTTATTCATCTAAGTCATCATCTCGATCTTTCTGCACTAGTGTTTGAGGTGAAGAA_-_ATGAGGGAGATTTTGCACATCCAAGGGGGTCAGTGTGGCAACCAGATTGGTGCCAAGTTCTGGGAGGTTGTGTGTACAGAGCATGGCATTGATCCCACTGGGAGTTATCAGGGAACCACTGATATCCAGCTTGAGAGGGTGAATGTGTACTACAATGTCAAGTCCACGGTGTGTGATATACCCCCGACTGGTCTCATGGACCTTGAGCCCGGAACCATGGACAGCGTGAGATCAGGCCCTTACGGTCAGATTTTCAGGCCTGATAACTTTGTTTTTGGCCAGTCTGGAGCTGGTAACAACTGGGCCAAGGGCCATTACACTGAAGGGGCTGAACTCATCGATTCCGTTCTGGATGTCGTCAGGAAAGAGGCCGAGAACTGCGATTGTCTCCAAGGGTTTCAAGTTTGCCATTCCCTGGGGGGTGGAACAGGGTCTGGAATGGGTACATTGCTCATATCCAAGATCAGAGAAGAGTACCCAGATAGGATGATGCTCACATTCTCGGTCTTCCCTTCTCCCAAGGTCTCAGATACAGTAGTGGAACCCTACAACGCTACGCTCTCTGTTCATCAGCTGGTGGAAAATGCAGATGAGTGTATGGTTCTCGACAATGAGGCCCTGTACGACATTTGTTTCAGGACACTCAAGCTCACTACTCCTAGCTTCGGAGATTTGAACCATTTAATCTCTGCGACTATGAGTGGAGTGACATGCTGCCTCAGATTTCCTGGGCAACTGAACTCGGACCTGAGGAAGCTTGCAGTGAACCTGATTCCATTCCCTCGTCTTCATTTCTTCATGGTTGGATTCGCTCCCCTGACCTCCCGAGGCTCCCAGCAGTACAGAGCACTGACCGTTCCAGAGCTCACGCAGCAGATGTGGGACTCTAAGAACATGATGTGTGCTGCGGATCCTCGGCATGGAAGGTACCTAACGGCATCCGCCATGTTCAGAGGGAAGATGAGCACCAAAGAAGTGGACGAGCAGATGATCAATGTGCAGAACAAGAACTCCTCGTACTTTGTGGAGTGGATCCCCCACAATGTCAAGTCCACGGTGTGTGATATACCCCCGACTGGACTGAAGATGGCCTCCACCTTCATTGGTAACTCAACATCCATCCAGGAGATGTTTAGAAGAGTGAGCGAGCAGTTCACGGCCATGTTCAGGAGGAAGGCCTTCTTGCACTGGTACACAGGAGAGGGCATGGACGAGATG

Fln Alignment:

CL18958Contig1___MREILHIQGGQCGNQIGAKFWEVVCTEHGIDPTGSYQGTTDIQLERVNVYYNVKSTVCDIPPTGLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEM
D5ABQ9_______________MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain