SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50922

Length: 361 nt

UniGene Fasta

>sp_v3.0_unigene50922
AGAAATGAAATTGCGAGCAGAATTGATAAGTCATCTTGATGCACGACGAAGAGCAGAAGCTTCAAGCAACTACAAAAGCCAATTTTTGGCAAATATGAGTCATGAACTTCGAACACCTATGGCTGCTGTTATCGGGCTTTTGGACATCTTGCTATGTGATGAATATCTCACTACTGAGCAAATAGCAATAGTCTCACAAATTCGCCGTTGCTCTACAGCTTTACTTCGACTACTGAACAACATCTTAGACCTGAGCAAGGTTGAATCGGGCAAGCTAGTGTTGGAGGAGGCAGAATTCGACCTAGGGCATGAGCTTGAAGGACTTGTGGACATGTTTTCTGTGCAGTGTTTTGATCATAAC

Ace file of the UniGene sp_v3.0_unigene50922

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	osmosensor histidine-aspartate kinase [Populus x canadensis]	-	-	0.0	79%
FL-Next	sp=Histidine kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	87%
Sma3	Histidine kinase osmosensor protein	-	-	2.12e-08	-

Source	Gene names
Sma3	At2g17820; GSVIVT00036756001; PHYPADRAFT_115730; PHYPADRAFT_119819; PHYPADRAFT_122612; PHYPADRAFT_124824; PHYPADRAFT_141514; PHYPADRAFT_5010; PHYPADRAFT_64481; POPTRDRAFT_593825; POPTRDRAFT_757135; POPTRDRAFT_793555; RCOM_0572760; SNLA; SNLB; hk1; iK1; uh

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	osmosensor activity	GO:0005034	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histidine phosphotransfer kinase activity	GO:0009927	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G17820.1	ATHK1, AHK1, HK1 histidine kinase 1 chr2:7743133-7748013 REVERSE LENGTH=1207	87%
RefSeq	Arabidopsis thaliana	NP_565424.1	histidine kinase 1 [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002337182.1	histidine kinase osmosensor protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SXL4

Fln msg: Distance to subject end: 613 aas, your sequence is shorter than subject: 120 - 1207

Fln protein: EMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLCDEYLTTEQIAIVSQIRRCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGHELEGLVDMFSVQCFDHN

Protein Length: 121

Fln nts: AGAAATGAAATTGCGAGCAGAATTGATAAGTCATCTTGATGCACGACGAAGAGCAGAAGCTTCAAGCAACTACAAAAGCCAATTTTTGGCAAATATGAGTCATGAACTTCGAACACCTATGGCTGCTGTTATCGGGCTTTTGGACATCTTGCTATGTGATGAATATCTCACTACTGAGCAAATAGCAATAGTCTCACAAATTCGCCGTTGCTCTACAGCTTTACTTCGACTACTGAACAACATCTTAGACCTGAGCAAGGTTGAATCGGGCAAGCTAGTGTTGGAGGAGGCAGAATTCGACCTAGGGCATGAGCTTGAAGGACTTGTGGACATGTTTTCTGTGCAGTGTTTTGATCATAAC

Fln Alignment:

CL18841Contig1___EMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLCDEYLTTEQIAIVSQIRRCSTAXXXXXXXXXXXSKVESGKLVLEEAEFDLGHELEGLVDMFSVQCFDHN
Q9SXL4_______________EMKLRAELIRQLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain