SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50912

Length: 398 nt

UniGene Fasta

>sp_v3.0_unigene50912
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGTGTGGGTCTCCTAAAGTTCATGCTCAGTGCGCAGAAGTTTGTGATTACCCTCTGTAGTTTCATTGCCTTCGCAATGGAGAAACGCAGGTCAGAAATCTTAGCATTCGTGTCTTTGTTACTACTGATATCCTTAAACTCATGCCATGGACAAAAGATAGCACAATGTGTAGAACAAGACCGTGTTGCATTATTAGCCTTCAAAGCCGGTATCGCTGAGGATCCGAGCGGAGCTCTGAAATCATGGACGGGAAATGATTGCTGCAAATGGAACGGTGTATTGTGCGATAACAGTAACGGTCGAGTGGCGAGCCTCATTCTTGATGGGGATCCCATGGGCGAAGGCAATAGCGTTTACATGAG

Ace file of the UniGene sp_v3.0_unigene50912

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRRNT_2 domain containing protein	-	-	5.0e-12	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G33612.1	Leucine-rich repeat (LRR) family protein chr1:12191312-12192679 FORWARD LENGTH=455	4.0e-14	53%
RefSeq	Arabidopsis thaliana	NP_001185131.1	Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	6.0e-14	53%
RefSeq	Populus trichocarpa	XP_002310361.1	predicted protein [Populus trichocarpa]	1.0e-12	49%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS28

Fln msg: Distance to subject end: 497 aas, your sequence is shorter than subject: 113 - 610

Fln protein: MLSAQKFVITLCSFIAFAMEKRRSEILAFVSLLLLISLNSCHGQKIAQCVEQDRVALLAFKAGIAEDPSGALKSWTGNDCCKWNGVLCDNSNGRVASLILDGDPMGEGNSVYM

Protein Length: 114

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGTGTGGGTCTCCTAAAGTTC_-_ATGCTCAGTGCGCAGAAGTTTGTGATTACCCTCTGTAGTTTCATTGCCTTCGCAATGGAGAAACGCAGGTCAGAAATCTTAGCATTCGTGTCTTTGTTACTACTGATATCCTTAAACTCATGCCATGGACAAAAGATAGCACAATGTGTAGAACAAGACCGTGTTGCATTATTAGCCTTCAAAGCCGGTATCGCTGAGGATCCGAGCGGAGCTCTGAAATCATGGACGGGAAATGATTGCTGCAAATGGAACGGTGTATTGTGCGATAACAGTAACGGTCGAGTGGCGAGCCTCATTCTTGATGGGGATCCCATGGGCGAAGGCAATAGCGTTTACATGAG

Fln Alignment:

CL18715Contig1___AQCVEQDRVALLAFKAGIAEDPSGALKSWT-GNDCC--KWNGVLCDNSNGRVASLILDGDPMGEGNSVYM
B8LS28_______________ATCFLKDKEALLSFKAAIPEDTTGTLITWTPGTDCCGGGWAGIQCDARSGRVTQLVLQ-NPEETNDTMYM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain