SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50904

Length: 1273 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene50904

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acyl-[acyl-carrier-protein] desaturase n=1 Tax=Picea sitchensis RepID=A9NVD4_PICSI	-	-	0.0	92%
FL-Next	sp=Acyl-[acyl-carrier-protein] desaturase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	ECs	Term	Type	e value	Identity
Sma3	Acyl-[acyl-carrier-protein] desaturase.	EC:1.14.19.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		0.0	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		0.0	%

Source	GOs	Term	Type	Identity
Sma3	acyl-[acyl-carrier-protein] desaturase activity	GO:0045300	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fatty acid desaturase, type 2	IPR005067	-	-
Sma3	Ribonucleotide reductase-related	IPR012348	-	-
Sma3	Stearoyl-ACP desaturase, conserved site	IPR005803	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02630.1	Plant stearoyl-acyl-carrier-protein desaturase family protein chr3:562164-564524 FORWARD LENGTH=396	78%
RefSeq	Arabidopsis thaliana	NP_186912.1	acyl-[acyl-carrier-protein] desaturase [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002330700.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVD4

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 377 - 412

Fln protein: MASAVCLAKCTLAPKYGCSSMPAGLHASTPLFHGARLGSANRGRSHKVSMTTTVPPEAKEVGKTKIHLQPREVHEQVTHSMPPEKVEIFKSLEDWAGNNILIHLKSVEKSWQPQDFLPDPSSEGFIDEVKELRERSLELPDDYLVCLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWATWTRMWTAEENRHGDLLNKYLYLCGRVDMKQIEKTIHYLIGSGMDPRTENSPYLGFLYTSFQERATFISHGNTARFAKGFGDLKLAQICGIIAADEKRHETAYTKIVEKLFEIDPDTTMLAFEDMMRKKVSMPAHLMYDGQDHNLFEHFSAVAQRLGVYTARDYADILEFLVKRWNVEKIEDLSSKGRKAQDYVC

Protein Length: 378

Fln nts: GGAGATTATGGAGGGAAGACGTAGAGGATATTGGATTTTATTTATCATGCAGACAGCCAAGTGGAGGCAGCTGCTCTGTGTCTATATTTTGAAGCGAAATTTCTTCTTCTGATTGTGTTTGGCAGATTAGAGAAGGAGAG_-_ATGGCGTCTGCTGTTTGTCTTGCAAAATGCACGCTAGCTCCCAAATATGGTTGTTCTTCAATGCCTGCGGGACTCCATGCGTCTACGCCTCTCTTCCATGGCGCCAGGCTTGGGTCGGCCAATCGGGGCAGATCGCACAAGGTTTCTATGACCACAACGGTGCCTCCCGAGGCCAAGGAAGTTGGAAAGACAAAAATCCATTTACAACCACGTGAAGTTCATGAACAGGTGACTCATTCCATGCCACCTGAGAAGGTTGAGATCTTTAAGTCGCTTGAGGACTGGGCAGGAAACAATATATTGATTCACTTAAAGTCTGTTGAGAAGTCTTGGCAGCCACAAGACTTCTTGCCTGATCCTTCTTCCGAGGGCTTCATTGATGAAGTCAAAGAATTGCGGGAGCGGTCGCTTGAATTACCAGATGACTACCTAGTTTGTCTAGTGGGTGATATGATTACAGAGGAAGCGTTGCCTACTTACCAGACTATGCTTAACACTTTGGATGGTGTAAGAGATGAGACTGGTGCCAGTCCCACATCCTGGGCAACGTGGACACGTATGTGGACAGCTGAGGAAAATAGACATGGTGATCTTCTTAATAAATATCTTTACTTGTGTGGCCGAGTGGACATGAAACAGATTGAAAAAACTATACATTATCTGATTGGGTCTGGAATGGATCCCCGAACAGAAAATAGTCCTTATCTTGGCTTCTTATACACTTCTTTCCAGGAGAGAGCAACATTCATATCGCATGGTAACACTGCAAGATTTGCCAAAGGATTTGGCGATCTGAAATTGGCCCAAATATGTGGAATTATTGCTGCAGACGAGAAGCGCCATGAGACTGCATATACCAAGATCGTGGAAAAGCTGTTTGAGATTGATCCTGACACTACAATGTTAGCTTTCGAAGATATGATGCGGAAAAAGGTTTCCATGCCTGCACATTTGATGTATGATGGGCAGGATCATAACTTGTTTGAGCACTTTTCAGCTGTTGCTCAGAGATTAGGTGTATACACAGCAAGGGATTATGCTGACATTTTGGAATTTCTAGTTAAGAGATGGAATGTGGAGAAAATAGAAGATCTTTCGAGCAAGGGAAGGAAGGCTCAAGATTATGTATGCAA

Fln Alignment:

CL18629Contig1___MASAVCLAKCTLAPKYGCSSMPAGLHASTPLFHGARLGSANRGRSHKVSMTTTVPPEAKEVGKTKIHLQPREVHEQVTHSMPPEKVEIFKSLEDWAGNNILIHLKSVEKSWQPQDFLPDPSSEGFIDEVKELRERSLELPDDYLVCLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWATWTRMWTAEENRHGDLLNKYLYLCGRVDMKQIEKTIHYLIGSGMDPRTENSPYLGFLYTSFQERATFISHGNTARFAKGFGDLKLAQICGIIAADEKRHETAYTKIVEKLFEIDPDTTMLAFEDMMRKKVSMPAHLMYDGQDHNLFEHFSAVAQRLGVYTARDYADILEFLVKRWNVEKIEDLSSKGRKAQDYVC
A9NVD4_______________MASAVCLVECMGALKYGCSSMAAGLLPPTPFFHGAKLGPANLGRSHKVSMTTTVPPKAKEVGKSKIHFQPHEVQEQVTHSMPPEKVEIFNSLEDWAENNILIHLKSVEKSWQPQDFLPDPSSEGFIDEVKELRERSLELPDDYLVCLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWATWTRMWTAEENRHGDLLNKYLYLCGRVDMRQIEKTIQYLVGFGMDPRTENSPYLGFLYTSFQERATFISHGNTARFAKGCGDLKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDTTMLAFEDMMRKKVSMPAHLMYDGQDDNLFEHFSAVAQRLGVYTARDYADILEFLVKRWNVEKIEDLSSKGRKAQDYVC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain