SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50903

Length: 1202 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene50903

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor HBP-1b(C1), putative n=1 Tax=Ricinus communis RepID=B9RG75_RICCO	-	-	0.0	76%
FL-Next	sp=TGACG-sequence-specific DNA-binding protein TGA-2.1; Nicotiana tabacum (Common tobacco).	-	-	0.0	75%
Sma3	BZIP transcription factor	-	-	2.822e-19	-

Source	Gene names
Sma3	80A08_2; ASF-1/G13; AT5G65210; At1g08320; At1g22070; At1g68640; At1g68640/F24J5_9; At1g77920; At3g12250; At5g06839; At5g06960; At5g10030; At5g65210; AtbZIP21; AtbZIP65; B1085F09.3; BZIP22; BZIP26; BZIP45; BZIP47; BZIP50; BZIP57; CdR15; D11; F24J5.12; F2E2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	GTPase activator activity	GO:0005096	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to xenobiotic stimulus	GO:0009410	Biological Process	-
Sma3	defense response, incompatible interaction	GO:0009814	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	TIP41-like protein	IPR007303	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G06950.1	AHBP-1B, TGA2 bZIP transcription factor family protein chr5:2152323-2154174 FORWARD LENGTH=330	73%
RefSeq	Arabidopsis thaliana	NP_974744.1	transcription factor TGA2 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002303938.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O24160

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 218 - 456

Fln protein: HCLSSGINA*YAGEYARWLDEHHRQINDLRSAVNSHVGDNELRVLVEGVMGHYDEIFRLKSVAAKADVFHLVSGMWKTPAERCFMWMGGFRPSELLKILVTHLEPLTEHQFMGINNLQHSSQQAEDALSQGMDALQQSLAETLASGSLGPPGTSGNVANYMGQMAMAMGKLGTLEGFVHQADNLRQQTLQQMHRILTTRQAARALLAISDYFSRLTD*

Protein Length: 219

Fln nts: CACTGCTTAAGCAGTGGTATCAACGCATAGTACGCGGGGGAGTATGCTCGTTGGCTGGATGAGCATCATCGACAGATAAATGATCTGAGGTCGGCAGTGAACTCACATGTAGGGGACAATGAGCTGCGTGTTCTGGTTGAAGGTGTCATGGGACATTACGATGAAATTTTTCGTCTGAAGAGTGTAGCTGCAAAAGCTGATGTCTTTCATCTGGTCTCAGGCATGTGGAAGACGCCTGCAGAAAGATGCTTCATGTGGATGGGAGGATTCCGTCCTTCTGAACTTCTGAAGATACTTGTCACTCATCTGGAACCATTAACAGAGCACCAGTTTATGGGCATTAACAATTTGCAACATTCATCACAACAGGCAGAAGATGCCTTATCACAGGGGATGGATGCCCTGCAACAATCTCTAGCAGAAACTCTTGCTTCTGGGTCCCTTGGTCCACCTGGCACTTCTGGAAATGTAGCGAACTATATGGGACAAATGGCAATGGCAATGGGAAAATTAGGTACCCTTGAAGGTTTTGTTCACCAGGCTGACAATTTGCGGCAACAGACACTACAGCAAATGCATAGGATTTTGACAACTCGCCAAGCAGCGCGTGCGCTTCTTGCTATCAGTGATTACTTTTCTCGTCTGactgactga___ctgactgactgactgactgactgCAGAGATTAAATTATTAGGAATCACATGCTTTGATCTGTACCACATTGCAGCCCTAGGCAATGGGCATAGCCACATCTATGAGCAATCCTGAAAGAGCTTCTCCATCTCTGACAGGATGGAGTTGATGAGGGGTTGCGAGGGTGGATGTATTGAAGATGAAATACAGAATACATGCTTCGAACCATGCAGAGGTTTGGCTTTGCCCCTTGGTATTTTGAAATAACTCTTGTACAATGATTGAAATCTTGTTAAATCATTGTTGTGGGAGGAAGTCTGAAATCACCCTTTGAGAATCCAGTTGTGTCTTGGGATAATTCTCAGCCTTTCATATTGAAGAAATTAAGCTAACTATTCCCTTGACATCCAAGATAGGATTTTCAAAGCTGAGTAGGCTTTATTTCTTTGAATTAGCTAGATAGGAATGTAAAGTATTTAGAAGTAATTATCCAGTATAATCACACAAGGTTGGGTCTCAGTGAACAAAAAACTTTTTTCTGTGGTTTCAAATGTAACATAATAACCAG

Fln Alignment:

CL18612Contig1___YAGEYARWLDEHHRQINDLRSAVNSHVGDNELRVLVEGVMGHYDEIFRLKSVAAKADVFHLVSGMWKTPAERCFMWMGGFRPSELLKILVTHLEPLTEHQFMGINNLQHSSQQAEDALSQGMDALQQSLAETLASGSLGPPGTSGNVANYMGQMAMAMGKLGTLEGFVHQADNLRQQTLQQMHXXXXXXXXXXXXXXXSDYFSR
O24160_______________FDAEYSRWLEEHNKHINELRTAVNAHASDPELRSIVNNVTAHFDEVFRVKGNAAKADVFHVLSGMWKTPAERCFMWIGGFRPSELLKLLVNQLEPLTEQQLAGIYNLQQSSHQAEDALSQGMEALQQSLAETLANGSPAPEGSSGDVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRVLTTRQSARALLAINEYFSR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain