SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50774

Length: 256 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene50774
TCACAGGGCCTCAGGCATCATCGACGAAGACAAGTTGAAAGTGGAGGAATGGTGTAACAGCTTAGCCAATTTGAAGGGTACAGTTCTGAGAGCCGAGGATGTAGCAGAAGCAGGATTATTTCTGGCCAGTGATGAAGCTAAGTATGTAAGTGGTCACAATCTTGTAGTCGATGGAGGATTTACAGTAGTCAACCATTCCTGGGGCCTCTATCAATAATAATGAGTTGACTGAAAGAACAGTAAAATTTGTGAGTTT

Ace file of the UniGene sp_v3.0_unigene50774 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein n=2 Tax=Arabidopsis RepID=Q9SCU0_ARATH	-	-	5.0e-14	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Putative sex determination protein tasselseed 2	-	-	4.878e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cyclopentanol dehydrogenase.	EC:1.1.1.163	-	8.142e-08	-

Source	Gene names
Sma3	3bhsd; At2g47140; At3g29250; At3g51680; GSVIVT00021537001; GSVIVT00021538001; GSVIVT00021540001; GSVIVT00021542001; GSVIVT00021544001; GSVIVT00021545001; GSVIVT00021546001; GSVIVT00021547001; GSVIVT00021548001; GSVIVT00028187001; GSVIVT00037292001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	testosterone dehydrogenase [NAD(P)] activity	GO:0030283	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:19173622-19174667 REVERSE LENGTH=303	2.0e-19	62%
RefSeq	Arabidopsis thaliana	NP_190736.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	2.0e-19	62%
RefSeq	Populus trichocarpa	XP_002325666.1	predicted protein, partial [Populus trichocarpa]	5.0e-19	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUM5

Fln msg: your sequence is shorter than subject: 72 - 291

Fln protein: HRASGIIDEDKLKVEEWCNSLANLKGTVLRAEDVAEAGLFLASDEAKYVSGHNLVVDGGFTVVNHSWGLYQ*

Protein Length: 73

Fln nts: TCACAGGGCCTCAGGCATCATCGACGAAGACAAGTTGAAAGTGGAGGAATGGTGTAACAGCTTAGCCAATTTGAAGGGTACAGTTCTGAGAGCCGAGGATGTAGCAGAAGCAGGATTATTTCTGGCCAGTGATGAAGCTAAGTATGTAAGTGGTCACAATCTTGTAGTCGATGGAGGATTTACAGTAGTCAACCATTCCTGGGGCCTCTATCAATAA___TAATGAGTTGACTGAAAGAACAGTAAAATTTGTGAGTTT

Fln Alignment:

CL17107Contig1___SGIIDEDKLKVEEWCNSLANLKGTVLRAEDVAEAGLFLASDEAKYVSGHNLVVDGGFTVVNHSWGLYQ
A9NUM5_______________SVVSEEDKAAVEAYCTSIGNLEGATLRAEDIAEAGLYLASDEAKYVSGHNLVVDGGFSVVNHSWKLYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain