SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50588

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene50588
CGTAAAGGTGTGGATGATCAAGGATTGCAAGAGATAATAGGGGCAGCGGTCAAAAGGAAAAAAGCTGCTCATGCAGGCATGTTTGATTTAGCAAAGACACCAAACAGACCAATGGTTCACATTGGTGGCTGAGTAATGAAGTATAAGAGAAACAAGATGATGTGACTTGTTGGCTCAGGGTCATTCCATTATGAATACAGGGGTCAGATGCCAATTAGGTAACAATCATTTTAGAGCTGC

Ace file of the UniGene sp_v3.0_unigene50588

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Molybdopterin cofactor synthesis protein A, putative n=1 Tax=Ricinus communis RepID=B9REL9_RICCO	-	-	1.0e-12	79%
FL-Next	sp=Molybdopterin biosynthesis protein CNX2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	79%

Source	Gene names
Sma3	At2g31955; B1178F07.5; CHLREDRAFT_106419; CNX2; F20M17.1; F22D22.30; GSVIVT00003725001; LOC_Os12g32230; OSJNBa0060K08.15; Os02g0258900; Os12g0507000; OsI_06637; OsI_38457; OsJ_06140; OsJ_36224; PHYPADRAFT_59617; PHYPADRAFT_69422; POPTRDRAFT_768273; RCOM_1

Source	GOs	Term	Type	Identity
Sma3	molybdopterin synthase complex	GO:0019008	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	Mo-molybdopterin cofactor biosynthetic process	GO:0006777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	MoaA/nifB/pqqE, iron-sulphur binding, conserved site	IPR000385	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Molybdenum cofactor synthesis C-terminal	IPR010505	-	-
Sma3	Molybdenum cofactor biosynthesis protein A	IPR013483	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G31955.1	CNX2 cofactor of nitrate reductase and xanthine dehydrogenase 2 chr2:13584635-13586484 REVERSE LENGTH=390	3.0e-17	79%
RefSeq	Arabidopsis thaliana	NP_001189652.1	Molybdopterin biosynthesis protein CNX2 [Arabidopsis thaliana]	4.0e-17	79%
RefSeq	Populus trichocarpa	XP_002314219.1	predicted protein [Populus trichocarpa]	4.0e-16	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q39055

Fln msg: your sequence is shorter than subject: 44 - 390

Fln protein: RKGVDDQGLQEIIGAAVKRKKAAHAGMFDLAKTPNRPMVHIGG*

Protein Length: 45

Fln nts: CGTAAAGGTGTGGATGATCAAGGATTGCAAGAGATAATAGGGGCAGCGGTCAAAAGGAAAAAAGCTGCTCATGCAGGCATGTTTGATTTAGCAAAGACACCAAACAGACCAATGGTTCACATTGGTGGCTGA___GTAATGAAGTATAAGAGAAACAAGATGATGTGACTTGTTGGCTCAGGGTCATTCCATTATGAATACAGGGGTCAGATGCCAATTAGGTAACAATCATTTTAGAGCTGC

Fln Alignment:

CL15074Contig1___RKGVDDQGLQEIIGAAVKRKKAAHAGMFDLAKTPNRPMVHIGG
Q39055_______________RSGADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain