SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50502

Length: 113 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene50502
GCAATCATTGGCACATTTGGACAATCTGAAGAATTACGCTGTGTTATTGCTGTTGTCCGCCATGGTGATCGGACACCTAAGCAGAAAGTAAAGCTAAAAGTGACACAGGAAAG

Ace file of the UniGene sp_v3.0_unigene50502 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoglycerate mutase-like-like protein n=6 Tax=Arabidopsis RepID=F4J8C7_ARATH	-	-	6.0e-12	97%
FL-Next	tr=T22N4.6 protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	97%

Source	Gene names
Sma3	At3g01310; At5g15070; CHLREDRAFT_115639; F2G14_190; FAP160; GSVIVT00020870001; LOC_Os03g48300; MtrDRAFT_AC151524g43v2; OSJNBa0022C08.16; Os01g0777700; Os03g0689100; OsI_03952; OsI_13083; OsJ_03661; OsJ_12165; P0413G02.33; PHYPADRAFT_184130; PHYPADRAFT_187

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Homeobox protein, antennapedia type, conserved site	IPR001827	-	-
Sma3	ATP-grasp fold	IPR011761	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01310.1	Phosphoglycerate mutase-like family protein chr3:94343-101603 REVERSE LENGTH=1056	7.0e-17	97%
RefSeq	Arabidopsis thaliana	NP_001030614.1	phosphoglycerate mutase-like-like protein [Arabidopsis thaliana]	9.0e-17	97%
RefSeq	Populus trichocarpa	XP_002305988.1	predicted protein [Populus trichocarpa]	2.0e-16	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9SRH8

Fln msg: Distance to subject end: 656 aas, your sequence is shorter than subject: 37 - 1015

Fln protein: AIIGTFGQSEELRCVIAVVRHGDRTPKQKVKLKVTQE

Protein Length: 38

Fln nts: GCAATCATTGGCACATTTGGACAATCTGAAGAATTACGCTGTGTTATTGCTGTTGTCCGCCATGGTGATCGGACACCTAAGCAGAAAGTAAAGCTAAAAGTGACACAGGAAAG

Fln Alignment:

CL14204Contig1___IIGTFGQSEELRCVIAVVRHGDRTPKQKVKLKVTQE
Q9SRH8_______________IIGTFGQSEELRCVIAVVRHGDRTPKQKVKLKVTEE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain