SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50346

Length: 149 nt

UniGene Fasta

>sp_v3.0_unigene50346
CTTCTCAATCTGGCTTCAAAGATTCCTGATCACTGTTTGAAGCCTGACTTAGGGCCAAAAACATACATTGCTTATGGCACGCGTGAAGAACTTGGTAGAGGTGATTCAGTGACAAAGTTGCATTGTGATATGTCTGATGCAGTGAATAT

Ace file of the UniGene sp_v3.0_unigene50346

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Lysine-specific demethylase 3A-B; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	87%
Sma3	ENBP1 protein	-	-	2.868e-08	-

Source	Gene names
Sma3	AT4g00990; At1g11950; At1g62310; At3g07610; At4g00990; B1175F05.34; ENBP1; F12F1.18; GSVIVT00006884001; GSVIVT00008625001; GSVIVT00023403001; GSVIVT00031870001; GSVIVT00037256001; LOC_Os03g31594; MLP3.6; OJ1124_D06.2-1; OJ1124_D06.2-2; OSJNBa0091B22.5; Os

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	DNA methylation on cytosine	GO:0032776	Biological Process	-
Sma3	histone H3-K9 demethylation	GO:0033169	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3		IPR013129	-	-
Sma3	WRC	IPR014977	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G11950.1	Transcription factor jumonji (jmjC) domain-containing protein chr1:4034747-4038310 REVERSE LENGTH=875	3.0e-22	79%
RefSeq	Arabidopsis thaliana	NP_172659.3	Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana]	4.0e-22	79%
RefSeq	Populus trichocarpa	XP_002331551.1	predicted protein, partial [Populus trichocarpa]	2.0e-22	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7JJA9

Fln msg: Distance to subject end: 250 aas, your sequence is shorter than subject: 49 - 870

Fln protein: LLNLASKIPDHCLKPDLGPKTYIAYGTREELGRGDSVTKLHCDMSDAVN

Protein Length: 50

Fln nts: CTTCTCAATCTGGCTTCAAAGATTCCTGATCACTGTTTGAAGCCTGACTTAGGGCCAAAAACATACATTGCTTATGGCACGCGTGAAGAACTTGGTAGAGGTGATTCAGTGACAAAGTTGCATTGTGATATGTCTGATGCAGTGAATAT

Fln Alignment:

CL12540Contig1___LNLASKIPDHCLKPDLGPKTYIAYGTREELGRGDSVTKLHCDMSDAVN
G7JJA9_______________LNLAVKLPAHVLKPDMGPKTYIAYGIREELGRGDSVTKLHCDMSDAVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain