SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50256

Length: 2089 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene50256
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGATTGATAAGCCGTTGTTTTATTTTCGGATCTGTCTGGACTGTTCACGGGATATGTTCCTTTGATCCTAATCCCTGCAGTCCAAGCAATTCCGACGATGGTTTCCCCGCTTTTCCGATTATGTTTTTGGACGCTCCTTCTCTGTGCCAACCACGTACGATCTGAAACCAGTTCTAACAAGACTGATGGCGCCCGGGTTCGAGTCCGGGTGGATGGAAAATCTGCCATTGGTGAGACGGACCAGGATTTTATATGTGTCACTATAGACTGGTGGCCATCAGACAAATGTGATTATGGGACCTGCAGCTGGGGGAACGCCTCCTTGTTAAATTTAGATCTTGAAAACCCACTGCTAGCAACTGCTGTGGAAGCTTTCCGTCCATTGAAGATCAGGTTGGGTGGATCACTGCAAGACAAAGTGATATATGATGTGGGAAAGTTGAAACAACCTTGTCTACCTTTTGTCTCGACTCAATCAGACACATTTTTTTTCTCAGGTGGATGCTTTCCCATGCAAAGATGGGATGCTTTGAATGCCTTTTTCAACAAAACAGGGGCATCTGTGGCTTTTGGATTGAACGCACTGAATGGAAAGCAATTGACGCCCAGCGCTGCTACGGGACCCTGGGATTCAAGCAATGCTCGTGATTTTATCCAGTATACAGTTGATCATGGTTACAAGATACAGGCATGGCAATTAGGAAATGAGCTGTCCGGAAGTGGCGTTGGAAACAACATCAGTGCCGAGCAGTACGCAGCTGACGTCTTTGAGCTTCATAAGCTTCTGAAAACGATTTACGAGAATCAGACAGTGAAACCACTCCTAGTTGCGCCGGATGGATTTTTTGACGCTGACTGGTTCACGAAGTTCATTAAACTAACGGAACCAAGAATTTTGAATGTTGTTACACATCATATCTACAATCTTGGGGCAGGTGTGGATCCAAACCTTACACAAAAGATACTGGATCCCGTATTTCTGAGCCAAGAATCATATGTATTCCAAGGCCTCCAATCCATCCTGAAGAATTATGCGCCTTGGGCTAAAGCCTGGGTGGGTGAATCAGGTGGAGCTTATAACAGTGGTCATGAGGGTGTCACCAATGCTTTTGTATCTAGTTTCTGGTATTTAGATCAACTTGGCATGTCAGCAAAGTTCAATACTGCCTCTTACTGCAGACAGAGCTTGATTGGTGGTAACTATGGCCTTTTAAACGCTACAACTTTTTTACCTAATCCTGATTATTACAGTGCACTTCTTTGGCATCGACTGATGGGAACACGTGTTCTTGACACAACTTCAGAAGGATCAGAAAACGTACGCGCTTATGCACATTGTGCCAAGAATGCTAAGGGAGTCACTTTGCTGTTGATCAACTACAGCAATAACACTCGTGCCTATGTGCGGGCCTTTGCAGGTTTAAGAAATTCGACACAGAAAAGAACTAGATTTGAGTATCACTTGACAGCAAAGGATGGTGATCTGCATAGCCAAACTGTGCTGCTTAATGGGATGATTTTGAATGTAACGGCTGCGGGTGAGATACCTTATTTCCCTGCACTGAGATATCGTGCTAGGAGACGAATTAGTTTGGCCCCACTCTCTATTGCATTTGCGCATTTTCCTTATGTTAGATTCCCAGCATGTGGGACCTAGGAATGGACTCTAGAGCCACATCATTATCATGTAGGACGTAAGAATGGACTCTAGAATGGGGTGGCTAGTTCCGTGTAGAAGCTTTTATATTAGGCGGTATGTATAATTTTTTTACATATATATACACAGCTGATCCATCACATCTACATCTATCCATATATACTAATAAACTATGCCAATATACAATCATGAATATACAATTATAGGGGATCCAATGCGGGTGGGGTGCAAATAAGCTAACTGCCCCGACCACTATACCATGCACTCACTTGCAAACTCTAGAGCCACATCATTATTTGTTCATAGATTGATTCATGGAAAATAAGTTGAATTGAGGTAGAAGCAGAAAAGTTATGACCTAGGAATGGGCTCTAACCTACATCATTATTTGTTCATA

Ace file of the UniGene sp_v3.0_unigene50256 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heparanase-like protein 3 [Arabidopsis thaliana] sp\|Q9FZP1.2\|HPSE3_ARATH RecName: Full=Heparanase-like protein 3; Flags: Precursor dbj\|BAF01139.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED93923.1\| Heparanase-like protein 3 [Arabidopsis thaliana]	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Heparanase-like protein 3	-	-	1.765e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.2.-.-	-	1.765e-12	-

Source	Gene names
Sma3	AT5G61250; At5g07830; At5g34940; At5g61250; F13G24.30; GSVIVT00006396001; GSVIVT00016263001; GSVIVT00030073001; GSVIVT00032761001; GSVIVT00032762001; LOC_Os03g11320; LOC_Os12g38920; MAF19.29; MFB13.2; MGG23.2; OJ1579_C03.21; OSJNBa0032L17.36; OSJNBa0035I0

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	lysosomal membrane	GO:0005765	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Calmodulin-binding domain, plant	IPR012417	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G34940.2	AtGUS3, GUS3 glucuronidase 3 chr5:13235912-13238718 REVERSE LENGTH=536	50%
RefSeq	Arabidopsis thaliana	NP_851093.1	Heparanase-like protein 3 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002324603.1	predicted protein, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: your sequence is longer than subject: 520 - 381

Fln protein: MVSPLFRLCFWTLLLCANHVRSETSSNKTDGARVRVRVDGKSAIGETDQDFICVTIDWWPSDKCDYGTCSWGNASLLNLDLENPLLATAVEAFRPLKIRLGGSLQDKVIYDVGKLKQPCLPFVSTQSDTFFFSGGCFPMQRWDALNAFFNKTGASVAFGLNALNGKQLTPSAATGPWDSSNARDFIQYTVDHGYKIQAWQLGNELSGSGVGNNISAEQYAADVFELHKLLKTIYENQTVKPLLVAPDGFFDADWFTKFIKLTEPRILNVVTHHIYNLGAGVDPNLTQKILDPVFLSQESYVFQGLQSILKNYAPWAKAWVGESGGAYNSGHEGVTNAFVSSFWYLDQLGMSAKFNTASYCRQSLIGGNYGLLNATTFLPNPDYYSALLWHRLMGTRVLDTTSEGSENVRAYAHCAKNAKGVTLLLINYSNNTRAYVRAFAGLRNSTQKRTRFEYHLTAKDGDLHSQTVLLNGMILNVTAAGEIPYFPALRYRARRRISLAPLSIAFAHFPYVRFPACGT*

Protein Length: 521

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGATTGATAAGCCGTTGTTTTATTTTCGGATCTGTCTGGACTGTTCACGGGATATGTTCCTTTGATCCTAATCCCTGCAGTCCAAGCAATTCCGACG_-_ATGGTTTCCCCGCTTTTCCGATTATGTTTTTGGACGCTCCTTCTCTGTGCCAACCACGTACGATCTGAAACCAGTTCTAACAAGACTGATGGCGCCCGGGTTCGAGTCCGGGTGGATGGAAAATCTGCCATTGGTGAGACGGACCAGGATTTTATATGTGTCACTATAGACTGGTGGCCATCAGACAAATGTGATTATGGGACCTGCAGCTGGGGGAACGCCTCCTTGTTAAATTTAGATCTTGAAAACCCACTGCTAGCAACTGCTGTGGAAGCTTTCCGTCCATTGAAGATCAGGTTGGGTGGATCACTGCAAGACAAAGTGATATATGATGTGGGAAAGTTGAAACAACCTTGTCTACCTTTTGTCTCGACTCAATCAGACACATTTTTTTTCTCAGGTGGATGCTTTCCCATGCAAAGATGGGATGCTTTGAATGCCTTTTTCAACAAAACAGGGGCATCTGTGGCTTTTGGATTGAACGCACTGAATGGAAAGCAATTGACGCCCAGCGCTGCTACGGGACCCTGGGATTCAAGCAATGCTCGTGATTTTATCCAGTATACAGTTGATCATGGTTACAAGATACAGGCATGGCAATTAGGAAATGAGCTGTCCGGAAGTGGCGTTGGAAACAACATCAGTGCCGAGCAGTACGCAGCTGACGTCTTTGAGCTTCATAAGCTTCTGAAAACGATTTACGAGAATCAGACAGTGAAACCACTCCTAGTTGCGCCGGATGGATTTTTTGACGCTGACTGGTTCACGAAGTTCATTAAACTAACGGAACCAAGAATTTTGAATGTTGTTACACATCATATCTACAATCTTGGGGCAGGTGTGGATCCAAACCTTACACAAAAGATACTGGATCCCGTATTTCTGAGCCAAGAATCATATGTATTCCAAGGCCTCCAATCCATCCTGAAGAATTATGCGCCTTGGGCTAAAGCCTGGGTGGGTGAATCAGGTGGAGCTTATAACAGTGGTCATGAGGGTGTCACCAATGCTTTTGTATCTAGTTTCTGGTATTTAGATCAACTTGGCATGTCAGCAAAGTTCAATACTGCCTCTTACTGCAGACAGAGCTTGATTGGTGGTAACTATGGCCTTTTAAACGCTACAACTTTTTTACCTAATCCTGATTATTACAGTGCACTTCTTTGGCATCGACTGATGGGAACACGTGTTCTTGACACAACTTCAGAAGGATCAGAAAACGTACGCGCTTATGCACATTGTGCCAAGAATGCTAAGGGAGTCACTTTGCTGTTGATCAACTACAGCAATAACACTCGTGCCTATGTGCGGGCCTTTGCAGGTTTAAGAAATTCGACACAGAAAAGAACTAGATTTGAGTATCACTTGACAGCAAAGGATGGTGATCTGCATAGCCAAACTGTGCTGCTTAATGGGATGATTTTGAATGTAACGGCTGCGGGTGAGATACCTTATTTCCCTGCACTGAGATATCGTGCTAGGAGACGAATTAGTTTGGCCCCACTCTCTATTGCATTTGCGCATTTTCCTTATGTTAGATTCCCAGCATGTGGGACCTAG___GAATGGACTCTAGAGCCACATCATTATCATGTAGGACGTAAGAATGGACTCTAGAATGGGGTGGCTAGTTCCGTGTAGAAGCTTTTATATTAGGCGGTATGTATAATTTTTTTACATATATATACACAGCTGATCCATCACATCTACATCTATCCATATATACTAATAAACTATGCCAATATACAATCATGAATATACAATTATAGGGGATCCAATGCGGGTGGGGTGCAAATAAGCTAACTGCCCCGACCACTATACCATGCACTCACTTGCAAACTCTAGAGCCACATCATTATTTGTTCATAGATTGATTCATGGAAAATAAGTTGAATTGAGGTAGAAGCAGAAAAGTTATGACCTAGGAATGGGCTCTAACCTACATCATTATTTGTTCATA

Fln Alignment:

CL11125Contig1___MQRWDALNAFFNKTGASVAFGLNALNGKQLTPSAAT-GPWDSSNARDFIQYTVDHGYKIQAWQLGNELSGSGVGNNISAEQYAADVFELHKLLKTIYENQTVKPLLVAPDGFFDADWFTKFIKLTEPRILNVVTHHIYNLGAGVDPNLTQKILDPVFLSQESYVFQGLQSILKNYAPWAKAWVGESGGAYNSGHEGVTNAFVSSFWYLDQLGMSAKFNTASYCRQSLIGGNYGLLNATTFLPNPDYYSALLWHRLMGTRVLDTTSEGSENVRAYAHCAKNAKGVTLLLINYSNNTRAYVRAFAGLRNSTQKRTRFEYHLTAKDGDLHSQTVLLNGMILNVTAAGEIPYFPALRYRARRRISLAPLSIAFAHFPYVRFPAC
B8LM26_______________MSRWDALNAFFNKTGAVVAFGLNALNGKRWKSDGATDGPWDSSNARDFIQYTVDHGHKIKAWELGNELSGSGVGTSISVEQYAADVIELHGILDGIYKDYEEKPLLIAPDGFFVADWFKEFLNLTGPNIMNVVTHHFYNLGAGVDNDLVEKILNPSYLSQEASTFKGLQAVLQNYGPWSKAWVGETGGAYNSGHNLITNAFVMSFWYLDQLGMASAFSTKSFCRQSLIGGNYGLLNTTTFLPNPDYYSALLWHRLMGTRVLATNSTGTEYLRAYAHCTKSSRGVTLLLINLSRDTGISVQVSTGSGTSTDRNSRLEYHLTAKDGDLHSQTVLLNGNILNITPDGEIPSLSAVTVPANRPILVAPLSIAFVNLPYVQFPAC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain